Commits · 5f4a7d5d08c122ef73a27ad6b1557afbcc1a5c84 · Thomas Weber / Mosaicatcher Update · GitLab

Snippets Groups Projects

May 17, 2018
- typo in snakefile · 5f4a7d5d
  Sascha Meiers authored 6 years ago
  
  5f4a7d5d
- making some changes to maryams SV classifier · eceaa978
  Sascha Meiers authored 6 years ago
  
  eceaa978
- made some changes · 0ca166ed
  maryamghr authored 6 years ago
  
  0ca166ed
- made a small change to be consistent in hom_del disp par · 0ed611d6
  maryamghr authored 6 years ago
  
  0ed611d6
- finished nb likelihood computation and seperated post processing · efda42e4
  maryamghr authored 6 years ago
  
  efda42e4
- fixed a bug in disp par estimation · 380360d4
  maryamghr authored 6 years ago
  
  380360d4
- fixed a bug in disp par estimation · 019b3920
  maryamghr authored 6 years ago
  
  019b3920
- fixed a bug in nb prob computing · 0fc1d1ff
  maryamghr authored 6 years ago
  
  0fc1d1ff
- simplified merging probs and haplotypes · 163ff946
  maryamghr authored 6 years ago
  
  163ff946
- renamed state column to class and kick out sce cells for now · 303fce3c
  maryamghr authored 6 years ago
  
  303fce3c
May 16, 2018
- added the parts fot nb prob computing · 0ba9ec67
  maryamghr authored 6 years ago
  
  0ba9ec67
- added an R script for getting haplotype and genotype names · a5bd66da
  maryamghr authored 6 years ago
  
  a5bd66da
- some small changes in the functions · 96aebe5d
  maryamghr authored 6 years ago
  
  Unverified
  
  96aebe5d
- Finished first part of MosaiClassifier. Preparing for the NB part · 129cc0c8
  Sascha Meiers authored 6 years ago
  
  129cc0c8
- Two more steps of MosaiClassifier: annotate strand states and counts · b8498cc9
  Sascha Meiers authored 6 years ago
  
  b8498cc9
- Continue work on the new classifier · 97c40191
  Sascha Meiers authored 6 years ago
  
  97c40191
- Prepared dummy file for strand states · a114a369
  Sascha Meiers authored 6 years ago
  
  a114a369
- Started building the main SV classifier function. Ongoing work · 2c980bf6
  Sascha Meiers authored 6 years ago
  
  2c980bf6
- Prepared the snakemake hook of SV classification · 46f883f7
  Sascha Meiers authored 6 years ago
  
  46f883f7
- Renamed and re-structured the files for mosaiClassifier · e335582f
  Sascha Meiers authored 6 years ago
  
  e335582f
- Merge essential part of SV classifier from "friendsofstrandseq/MaRyam" into mosaiClassifier · f991c627
  Sascha Meiers authored 6 years ago
  
  f991c627
- Renaming files · 2afb28dc
  Sascha Meiers authored 6 years ago
  
  2afb28dc
- Reduced Maryam classifier to essential part · c4a1a023
  Sascha Meiers authored 6 years ago
  
  c4a1a023
- CLEAN UP: kicked out all old rules · 3f2ab4fc
  Sascha Meiers authored 6 years ago
  
  3f2ab4fc
- add dummy code here (todo for later) · 9a6e83fa
  Sascha Meiers authored 6 years ago
  
  9a6e83fa
- Reduced the number of simulations · 1fe37f15
  Sascha Meiers authored 6 years ago
  
  1fe37f15
- add new SV plot and prepare Snakefile for new SV classifier · 6335805c
  Sascha Meiers authored 6 years ago
  
  6335805c
May 15, 2018
- small edit in a comment · 14072656
  maryamghr authored 6 years ago
  
  14072656
- added the post processing steps and simple haplotype and genotype names · 07815058
  maryamghr authored 6 years ago
  
  07815058
- updated · c32dc0c5
  maryamghr authored 6 years ago
  
  c32dc0c5
May 14, 2018
- merged Maryam's and Sascha's classifiers · cb7cf04f
  maryamghr authored 6 years ago
  
  cb7cf04f
May 09, 2018
- fixed a bug in cell types format change · 8acb6a41
  maryamghr authored 6 years ago
  
  8acb6a41
May 08, 2018
- fixing a bug: NB parameters were not sorted based on cell names · a135317a
  maryamghr authored 6 years ago
  
  a135317a
May 04, 2018
- print a warning if some cells are totally removed because of SCEs · 68c3c0df
  maryamghr authored 6 years ago
  
  Unverified
  
  68c3c0df
Mar 27, 2018
- added two functions for defining genotype classes · 1deb4822
  maryamghr authored 7 years ago
  
  1deb4822
- fixed a bug · b10da4a2
  maryamghr authored 7 years ago
  
  Unverified
  
  b10da4a2
- add GT classes · cbe8eae8
  maryamghr authored 7 years ago
  
  Unverified
  
  cbe8eae8
- made some adjustments · 80900972
  maryamghr authored 7 years ago
  
  Unverified
  
  80900972
- added simplifed option in addJumpProb finction · 75f51331
  maryamghr authored 7 years ago
  
  75f51331
- added 'simlified option' to plot simple probability table with fewer CNV categories · 7cb874c5
  daewoooo authored 7 years ago
  
  7cb874c5