Split into files ; define modes & associated conda envs ; run on a single chromosome by keeping full initial BAM  ; functionnal until strandphaser

Daily progress ; cleaning & docs ; Test to work with BAM specific to one chr, still not fully functionnal ; Classic usage functionnal until rule mosaiClassifier_calc_probs

EMBLEM license

Fixing error messages in plot-clustering. Attention! I have no clue what I am doing here (since it's not my code), but it is creating errors when applied to a single-chromosome dataset so it needed to be fixed