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Created with Raphaël 2.2.018Jan17161512111022Dec2120131211874130Nov28201716141230Oct272625taking into account "cw" type as well as "wc" typetaking into account "cw" type as well as "wc" typefixed problem with sample names -> needs a re-install of Mosaicatcherfixed problem with sample names -> needs a re-install of Mosaicatcherfixed problem with sample names -> needs a re-install of Mosaicatcherfixed problem with sample names -> needs a re-install of Mosaicatcherhandle the case where all cells have SCE in one chrhandle the case where all cells have SCE in one chrfixed a bugfixed a bugREADME formattingREADME formattingREADME formattingREADME formattingExplain Bioconda in READMEExplain Bioconda in READMEExplain Bioconda in READMEExplain Bioconda in READMESwitch environment to R 3.4.1Switch environment to R 3.4.1Switch environment to R 3.4.1Switch environment to R 3.4.1Fix error "sh: 1: /bin/gtar: not found" when installing MaRyam or StrandPhaseR by setting TAR env variable.Fix error "sh: 1: /bin/gtar: not found" when installing MaRyam or StrandPhaseR by setting TAR env variable.Fix error "sh: 1: /bin/gtar: not found" when installing MaRyam or StrandPhaseR by setting TAR env variable.Fix error "sh: 1: /bin/gtar: not found" when installing MaRyam or StrandPhaseR by setting TAR env variable.Fix mergeBams rule, whose lambda input function gave an error when working with simulated samplesFix mergeBams rule, whose lambda input function gave an error when working with simulated samplesFix mergeBams rule, whose lambda input function gave an error when working with simulated samplesFix mergeBams rule, whose lambda input function gave an error when working with simulated samplesMerge branch 'master' of https://github.com/friendsofstrandseq/pipelineMerge branch 'master' of https://github.com/friendsofstrandseq/pipelineMerge branch 'master' of https://github.com/friendsofstrandseq/pipelineMerge branch 'master' of https://github.com/friendsofstrandseq/pipelineremoved multi-allelic variants from external variant call setremoved multi-allelic variants from external variant call setremoved multi-allelic variants from external variant call setremoved multi-allelic variants from external variant call setConda environment with dependencies to run this pipelineConda environment with dependencies to run this pipeline