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Created with Raphaël 2.2.01Nov29Oct28271917161211109876529Sep28212019181712112Aug131Jul262524212018171311106427Jun262120191817Fix rule postprocessing_sv_group_table after adding "_scedist" to segmentation parametersFix rule postprocessing_sv_group_table after adding "_scedist" to segmentation parametersFix rule postprocessing_sv_group_table after adding "_scedist" to segmentation parametersFix rule postprocessing_sv_group_table after adding "_scedist" to segmentation parametersdebugging dockerfiledebugging dockerfiledebugging dockerfiledebugging dockerfilemissing dependency for freebayesmissing dependency for freebayesmissing dependency for freebayesmissing dependency for freebayesuse dev tag of singularity imageuse dev tag of singularity imageuse dev tag of singularity imageuse dev tag of singularity imageinstall FreeBayes within Docker containerinstall FreeBayes within Docker containerinstall FreeBayes within Docker containerinstall FreeBayes within Docker containerThis might (?) fix a problem that seemed to occur randomly using singularityThis might (?) fix a problem that seemed to occur randomly using singularityThis might (?) fix a problem that seemed to occur randomly using singularityThis might (?) fix a problem that seemed to occur randomly using singularityImportant flag *sn_sites_to_genotype* in the configfile. This overwrites the entry from *Snake.config.json*. The file it points to has to be provided by the user (too big to include into image)Important flag *sn_sites_to_genotype* in the configfile. This overwrites the entry from *Snake.config.json*. The file it points to has to be provided by the user (too big to include into image)Important flag *sn_sites_to_genotype* in the configfile. This overwrites the entry from *Snake.config.json*. The file it points to has to be provided by the user (too big to include into image)Important flag *sn_sites_to_genotype* in the configfile. This overwrites the entry from *Snake.config.json*. The file it points to has to be provided by the user (too big to include into image)Make reference genome a parameter rather than an input file. This avoids trouble within singularity, where input file existence cannot be checked before the container has been loadedMake reference genome a parameter rather than an input file. This avoids trouble within singularity, where input file existence cannot be checked before the container has been loadedMake reference genome a parameter rather than an input file. This avoids trouble within singularity, where input file existence cannot be checked before the container has been loadedMake reference genome a parameter rather than an input file. This avoids trouble within singularity, where input file existence cannot be checked before the container has been loadedAdd python3 dependncy to Dockerfile and move to latest StrandPhaser versionAdd python3 dependncy to Dockerfile and move to latest StrandPhaser versionAdd python3 dependncy to Dockerfile and move to latest StrandPhaser versionAdd python3 dependncy to Dockerfile and move to latest StrandPhaser versionfixed missing wildcards in 'grouptrack'xfixed missing wildcards in 'grouptrack'xfixed missing wildcards in 'grouptrack'xfixed missing wildcards in 'grouptrack'x
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