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Created with Raphaël 2.2.026Apr21201211974131Mar29282116Sep24Mar11Jul1025Jun2322219May11Mar1093Jan19Dec16151110987654230Nov139872129Oct28271917161211109876529SepSplit into files ; define modes & associated conda envs ; web report working ; run on a single chromosome by keeping full initial BAM ; fully functionnalSplit into files ; define modes & associated conda envs ; web report working ; run on a single chromosome by keeping full initial BAM ; fully functionnalSplit into files ; define modes & associated conda envs ; web report working ; run on a single chromosome by keeping full initial BAM ; fully functionnalSplit into files ; define modes & associated conda envs ; web report working ; run on a single chromosome by keeping full initial BAM ; fully functionnalSplit into files ; define modes & associated conda envs ; web report working ; run on a single chromosome by keeping full initial BAM ; functionnal until mosaiclassifierSplit into files ; define modes & associated conda envs ; web report working ; run on a single chromosome by keeping full initial BAM ; functionnal until mosaiclassifierSplit into files ; define modes & associated conda envs ; web report working ; run on a single chromosome by keeping full initial BAM ; functionnal until mosaiclassifierSplit into files ; define modes & associated conda envs ; web report working ; run on a single chromosome by keeping full initial BAM ; functionnal until mosaiclassifierSplit into files ; define modes & associated conda envs ; web report working ; run on a single chromosome by keeping full initial BAM ; functionnal until haplotaggingSplit into files ; define modes & associated conda envs ; web report working ; run on a single chromosome by keeping full initial BAM ; functionnal until haplotaggingSplit into files ; define modes & associated conda envs ; web report working ; run on a single chromosome by keeping full initial BAM ; functionnal until haplotaggingSplit into files ; define modes & associated conda envs ; web report working ; run on a single chromosome by keeping full initial BAM ; functionnal until haplotaggingSplit into files ; define modes & associated conda envs ; web report working ; run on a single chromosome by keeping full initial BAM ; functionnal until strandphaserSplit into files ; define modes & associated conda envs ; web report working ; run on a single chromosome by keeping full initial BAM ; functionnal until strandphaserSplit into files ; define modes & associated conda envs ; web report working ; run on a single chromosome by keeping full initial BAM ; functionnal until strandphaserSplit into files ; define modes & associated conda envs ; web report working ; run on a single chromosome by keeping full initial BAM ; functionnal until strandphaserSplit into files ; define modes & associated conda envs ; run on a single chromosome by keeping full initial BAM ; functionnal until strandphaserSplit into files ; define modes & associated conda envs ; run on a single chromosome by keeping full initial BAM ; functionnal until strandphaserSplit into files ; define modes & associated conda envs ; run on a single chromosome by keeping full initial BAM ; functionnal until strandphaserSplit into files ; define modes & associated conda envs ; run on a single chromosome by keeping full initial BAM ; functionnal until strandphaserNew function to check concordance between folder name and BAM SM tagsNew function to check concordance between folder name and BAM SM tagsNew function to check concordance between folder name and BAM SM tagsNew function to check concordance between folder name and BAM SM tagsAdd input function to handle BAM filesAdd input function to handle BAM filesAdd input function to handle BAM filesAdd input function to handle BAM filesDaily progress ; cleaning & docs ; Fully functionnal with plots & statsDaily progress ; cleaning & docs ; Fully functionnal with plots & statsDaily progress ; cleaning & docs ; Fully functionnal with plots & statsDaily progress ; cleaning & docs ; Fully functionnal with plots & statsDaily progress ; cleaning & docs ; Test to work with BAM specific to one chr, still not fully functionnal ; Classic usage functionnal until rule mosaiClassifier_calc_probsDaily progress ; cleaning & docs ; Test to work with BAM specific to one chr, still not fully functionnal ; Classic usage functionnal until rule mosaiClassifier_calc_probsDaily progress ; cleaning & docs ; Test to work with BAM specific to one chr, still not fully functionnal ; Classic usage functionnal until rule mosaiClassifier_calc_probsDaily progress ; cleaning & docs ; Test to work with BAM specific to one chr, still not fully functionnal ; Classic usage functionnal until rule mosaiClassifier_calc_probsDaily progress ; cleaning & docs ; Functionnal until MosaiClassifierDaily progress ; cleaning & docs ; Functionnal until MosaiClassifierDaily progress ; cleaning & docs ; Functionnal until MosaiClassifierDaily progress ; cleaning & docs ; Functionnal until MosaiClassifier