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Created with Raphaël 2.2.021Sep2019181712112Aug131Jul262524212018171311106427Jun262120191817151413125430May292625242322Add some more GTCUTOFF parametersAdd some more GTCUTOFF parametersAdd some more GTCUTOFF parametersAdd some more GTCUTOFF parametersSet counts of blacklisted bins to zero during normalizationSet counts of blacklisted bins to zero during normalizationSet counts of blacklisted bins to zero during normalizationSet counts of blacklisted bins to zero during normalizationUse local normalization scriptUse local normalization scriptUse local normalization scriptUse local normalization scriptCopied R/norm.R from mosaicatcher repo to utils/normalize.RCopied R/norm.R from mosaicatcher repo to utils/normalize.RCopied R/norm.R from mosaicatcher repo to utils/normalize.RCopied R/norm.R from mosaicatcher repo to utils/normalize.RInclude statistics on complex regions in callset summary statisticsInclude statistics on complex regions in callset summary statisticsInclude statistics on complex regions in callset summary statisticsInclude statistics on complex regions in callset summary statisticsSome more debugging output to plot scriptSome more debugging output to plot scriptSome more debugging output to plot scriptSome more debugging output to plot scriptadded a cutoff on the fraction of blacklisted bins for SV callingadded a cutoff on the fraction of blacklisted bins for SV callingadded a cutoff on the fraction of blacklisted bins for SV callingadded a cutoff on the fraction of blacklisted bins for SV callingMerge blacklisted intervals when below 500kb apartMerge blacklisted intervals when below 500kb apartMerge blacklisted intervals when below 500kb apartMerge blacklisted intervals when below 500kb apartOutput and plot single cell segmentationOutput and plot single cell segmentationOutput and plot single cell segmentationOutput and plot single cell segmentationRemove poor parameter combinations for BPDENSRemove poor parameter combinations for BPDENSRemove poor parameter combinations for BPDENSRemove poor parameter combinations for BPDENS