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Created with Raphaël 2.2.04Jul27Jun262120191817151413125430May29262524232220191817161514Use floats instead of ints for ploidy estimation --> now also works with normalized countsUse floats instead of ints for ploidy estimation --> now also works with normalized countsUse floats instead of ints for ploidy estimation --> now also works with normalized countsUse floats instead of ints for ploidy estimation --> now also works with normalized countsAdd note on how the conda environment was created to readme.Add note on how the conda environment was created to readme.Add note on how the conda environment was created to readme.Add note on how the conda environment was created to readme.Re-activate installation of StrandPhaseR in Snakefile. Otherwise the pipeline doesn't work with the bioconda environment. (I hope that this doesn't have side effects on the Singularity workflow.)Re-activate installation of StrandPhaseR in Snakefile. Otherwise the pipeline doesn't work with the bioconda environment. (I hope that this doesn't have side effects on the Singularity workflow.)Re-activate installation of StrandPhaseR in Snakefile. Otherwise the pipeline doesn't work with the bioconda environment. (I hope that this doesn't have side effects on the Singularity workflow.)Re-activate installation of StrandPhaseR in Snakefile. Otherwise the pipeline doesn't work with the bioconda environment. (I hope that this doesn't have side effects on the Singularity workflow.)Added rule for ploidy estimationAdded rule for ploidy estimationAdded rule for ploidy estimationAdded rule for ploidy estimationUse singularity image version 0.1Use singularity image version 0.1Use singularity image version 0.1Use singularity image version 0.1Simple tool to estimate ploidy (either of whole genome or of individual chromsomomes across cells)Simple tool to estimate ploidy (either of whole genome or of individual chromsomomes across cells)Simple tool to estimate ploidy (either of whole genome or of individual chromsomomes across cells)Simple tool to estimate ploidy (either of whole genome or of individual chromsomomes across cells)keep information about the number of used bins up to the SV call setkeep information about the number of used bins up to the SV call setkeep information about the number of used bins up to the SV call setkeep information about the number of used bins up to the SV call setSelect Mosaicatcher version 0.3Select Mosaicatcher version 0.3Select Mosaicatcher version 0.3Select Mosaicatcher version 0.3Merge branch 'singularity' of https://github.com/friendsofstrandseq/pipeline into singularityMerge branch 'singularity' of https://github.com/friendsofstrandseq/pipeline into singularityMerge branch 'singularity' of https://github.com/friendsofstrandseq/pipeline into singularityMerge branch 'singularity' of https://github.com/friendsofstrandseq/pipeline into singularityMore README updatesMore README updatesMore README updatesMore README updates