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Created with Raphaël 2.2.011Oct109876529Sep28212019181712112Aug131Jul262524212018171311106427Jun2621201918171514131254Merge changesMerge changesMerge changesMerge changesSome code formatting and cleanupSome code formatting and cleanupSome code formatting and cleanupSome code formatting and cleanupIntegrate plot-clustering.R in snakemake pipelineIntegrate plot-clustering.R in snakemake pipelineIntegrate plot-clustering.R in snakemake pipelineIntegrate plot-clustering.R in snakemake pipelineAdd group labels to SV plotsAdd group labels to SV plotsAdd group labels to SV plotsAdd group labels to SV plotsUpdate conda environment and include packages r-pheatmap, bioconductor-complexheatmap, and r-gplots needed by plot-clustering.RUpdate conda environment and include packages r-pheatmap, bioconductor-complexheatmap, and r-gplots needed by plot-clustering.RUpdate conda environment and include packages r-pheatmap, bioconductor-complexheatmap, and r-gplots needed by plot-clustering.RUpdate conda environment and include packages r-pheatmap, bioconductor-complexheatmap, and r-gplots needed by plot-clustering.RAdd Hyobin's script (original filename was Make_Mosaic_plot_chr.R)Add Hyobin's script (original filename was Make_Mosaic_plot_chr.R)Add Hyobin's script (original filename was Make_Mosaic_plot_chr.R)Add Hyobin's script (original filename was Make_Mosaic_plot_chr.R)Vary parameter --sce_add_cutoff of detect_strand_states.py in SnakefileVary parameter --sce_add_cutoff of detect_strand_states.py in SnakefileVary parameter --sce_add_cutoff of detect_strand_states.py in SnakefileVary parameter --sce_add_cutoff of detect_strand_states.py in SnakefileUpdate on filter/merge scripts sent by Jan today.Update on filter/merge scripts sent by Jan today.Update on filter/merge scripts sent by Jan today.Update on filter/merge scripts sent by Jan today.Script to parse the output of script to merge SVs and create a table mapping segments to GROUP IDScript to parse the output of script to merge SVs and create a table mapping segments to GROUP IDScript to parse the output of script to merge SVs and create a table mapping segments to GROUP IDScript to parse the output of script to merge SVs and create a table mapping segments to GROUP IDChange cell mixing setup: always use N=150 cells and sample with replacementChange cell mixing setup: always use N=150 cells and sample with replacementChange cell mixing setup: always use N=150 cells and sample with replacementChange cell mixing setup: always use N=150 cells and sample with replacement