Deleted src/dataproc/__pycache__/__init__.cpython-38.pyc,...

Deleted src/dataproc/__pycache__/__init__.cpython-38.pyc, src/dataproc/__pycache__/admin.cpython-38.pyc, src/dataproc/__pycache__/apps.cpython-38.pyc, src/dataproc/__pycache__/models.cpython-38.pyc, src/dataproc/api/__init__.py, src/dataproc/api/serializers.py, src/dataproc/api/urls.py, src/dataproc/api/views.py, src/dataproc/migrations/models/report.py, src/dataproc/migrations/models/rsf.py, src/dataproc/migrations/__init__.py, src/dataproc/tests/__init.py__, src/dataproc/tests/test_forms.py, src/dataproc/tests/test_models.py, src/dataproc/tests/test_urls.py, src/dataproc/tests/test_views.py, src/dataproc/__init__.py, src/dataproc/admin.py, src/dataproc/apps.py, src/dataproc/models.py, src/dataproc/settings.py, src/dataproc/views.py, src/myservice/__pycache__/__init__.cpython-38.pyc, src/myservice/__pycache__/settings.cpython-38.pyc, src/myservice/__pycache__/urls.cpython-38.pyc, src/myservice/__init__.py, src/myservice/asgi.py, src/myservice/settings.py, src/myservice/urls.py, src/myservice/wsgi.py, src/manage.py files

src/dataproc/admin.py

-from django.contrib import admin
-
-# Register your models here.

src/dataproc/api/serializers.py

-from rest_framework import serializers
-from dataproc.models import Contruct
-
-
-class ContructSerializer(serializers.ModelSerializer):
-	class Meta:
-		model = Contruct
-		fields = ['title', 'created_at', 'updated_at',]
\ No newline at end of file

src/dataproc/api/urls.py

-from django.urls import path
-from dataproc.api.views import(
-	api_detail_construct_view,
-	api_update_construct_view,
-	api_delete_construct_view,
-	api_create_construct_view,
-)
-
-app_name = 'dataproc'
-
-urlpatterns = [
-	path('<slug>/', api_detail_construct_view, name="detail"),
-	path('<slug>/update', api_update_construct_view, name="update"),
-	path('<slug>/delete', api_delete_construct_view, name="delete"),
-	path('create', api_create_construct_view, name="create"),
-]
\ No newline at end of file

src/dataproc/api/views.py

-from rest_framework import status
-from rest_framework.response import Response
-from rest_framework.decorators import api_view
-
-from dataproc.models import Construct
-from dataproc.api.serializers import ConstructSerializer
-
-SUCCESS = 'success'
-ERROR = 'error'
-DELETE_SUCCESS = 'deleted'
-UPDATE_SUCCESS = 'updated'
-CREATE_SUCCESS = 'created'
-
-@api_view(['GET', ])
-def api_detail_construct_view(request, slug):
-
-	try:
-		construct = Construct.objects.get(slug=slug)
-	except Construct.DoesNotExist:
-		return Response(status=status.HTTP_404_NOT_FOUND)
-
-	if request.method == 'GET':
-		serializer = ConstructSerializer(blog_post)
-		return Response(serializer.data)
-
-
-@api_view(['PUT',])
-def api_update_construct_view(request, slug):
-
-	try:
-		construct = Construct.objects.get(slug=slug)
-	except Construct.DoesNotExist:
-		return Response(status=status.HTTP_404_NOT_FOUND)
-
-	if request.method == 'PUT':
-		serializer = ConstructSerializer(construct, data=request.data)
-		data = {}
-		if serializer.is_valid():
-			serializer.save()
-			data['SUCCESS'] = UPDATE_SUCCESS
-			return Response(data=data)
-		return Response(serializer.errors, status=status.HTTP_400_BAD_REQUEST)
-
-
-@api_view(['DELETE',])
-def api_delete_blog_view(request, slug):
-
-	try:
-		construct = Construct.objects.get(slug=slug)
-	except Construct.DoesNotExist:
-		return Response(status=status.HTTP_404_NOT_FOUND)
-
-	if request.method == 'DELETE':
-		operation = construct.delete()
-		data = {}
-		if operation:
-			data['SUCCESS'] = DELETE_SUCCESS
-		return Response(data=data)
-
-
-@api_view(['POST'])
-def api_create_construct_view(request):
-
-	construct = Construct()
-
-	if request.method == 'POST':
-		serializer = ConstructSerializer(construct, data=request.data)
-		data = {}
-		if serializer.is_valid():
-			serializer.save()
-			return Response(serializer.data, status=status.HTTP_201_CREATED)
-		return Response(serializer.errors, status=status.HTTP_400_BAD_REQUEST)
\ No newline at end of file

src/dataproc/apps.py

-from django.apps import AppConfig
-
-
-class apiConfig(AppConfig):
-    name = 'api'

src/dataproc/migrations/models/report.py

-from django.db import models, StatisticalReport
-from neomodel import StructuredNode, StringProperty, IntegerProperty,UniqueIdProperty, RelationshipTo, DateTimeProperty, BooleanProperty
-
-class Report(StructuredNode):
- 	report_path=StringProperty()
- 	report_source=StringProperty()
- 	report_size=StringProperty()
- 	
- 	# Relationships
- 	is_statisticalreport=RelationshipTo(StatisticalReport, 'IS')
\ No newline at end of file

src/dataproc/migrations/models/rsf.py

-from django.db import models, report, DPStep, MTZfile, ScalepackFile, Reference, Construct
-from neomodel import StructuredNode, StringProperty, IntegerProperty,UniqueIdProperty, RelationshipTo, DateTimeProperty, BooleanProperty
-
-class RefelctionStructureFactors(StructuredNode):
- 	rsf_source=StringProperty()
- 	rsf_filesize=StringProperty()
- 	rsf_filepath=StringProperty()
-
- 	# Relationships
- 	input_as_ref=RelationshipTo(DPStep, 'INPUT_AS_REFERENCE')
- 	input_of=RelationshipTo(DPStep, 'INPUT')
- 	generates_mtz=RelationshipTo(MTZfile, 'GENERATES')
- 	generates_scalepack=RelationshipTo(ScalepackFile, 'GENERATES')
- 	labelled=RelationshipTo(Reference, 'LABELLED')
- 	belongs=RelationshipTo(Construct, 'BELONGS')
\ No newline at end of file

src/dataproc/models.py

-# from django.db import models
-# from neomodel import StructuredNode, StringProperty, IntegerProperty,UniqueIdProperty, RelationshipTo, DateTimeProperty, BooleanProperty
-
-# class City(StructuredNode):
-#     code = StringProperty(unique_index=True, required=True)
-#     name = StringProperty(index=True, default="city")
-
-from django.db import models
-from django.utils.text import slugify
-from django.conf import settings
-
-class Contruct(models.Model):
-	title 				= models.CharField(max_length=50, null=False, blank=True)
-	created_at	 		= models.DateTimeField(auto_now_add=True, verbose_name="created at")
-	updated_at	 		= models.DateTimeField(auto_now=True, verbose_name="updated at")
-	slug 				= models.SlugField(blank=True, unique=True)
-
-	def __str__(self):
-		return self.title
-		
-#####################################
-# Nodes and properties of the model #
-#####################################
-
-# class LigandsFitting(StructuredNode):
-# 	uid=UniqueIdProperty()
-# 	dp_step_name = StringProperty()
-# 	created_at=DateTimeProperty()
-# 	updated_at=DateTimeProperty()
-# 	pipedream_id=IntegerProperty()
-# 	score=IntegerProperty()
-# 	fitting_success=BooleanProperty()
-
-# class Refinement(StructuredNode):
-# 	uid=UniqueIdProperty()
-# 	dp_step_name=StringProperty()
-# 	created_at=DateTimeProperty()
-# 	updated_at=DateTimeProperty()
-
-# class PostRefinement(StructuredNode):
-# 	uid=UniqueIdProperty()
-# 	dp_step_name=StringProperty()
-# 	pipedream_id=IntegerProperty()
-# 	created_at=DateTimeProperty()
-# 	updated_at=DateTimeProperty()
-
-# class ReductionScaling(StructuredNode):
-# 	uid=UniqueIdProperty()
-# 	dp_step_name=StringProperty()
-# 	created_at=DateTimeProperty()
-# 	updated_at=DateTimeProperty()
-
-# class autoPROC(StructuredNode):
-# 	uid=UniqueIdProperty()
-# 	tool_name=StringProperty()
-
-# class Buster(StructuredNode):
-# 	uid=UniqueIdProperty()
-# 	tool_name=StringProperty()
-
-# class Rhofit(StructuredNode):
-# 	uid=UniqueIdProperty()
-# 	tool_name=StringProperty()
-
-# class StatisticalReport(StructuredNode):
-# 	uid=UniqueIdProperty()
-# 	report_name=StringProperty()
-
-# class ComputingHost(StructuredNode):
-# 	ch_softwares=StringProperty()
-# 	ch_softwares_number=IntegerProperty()
-
-# class StorageHost(StructuredNode):
-# 	sh_files=StringProperty()
-# 	sh_files_number=IntegerProperty()
-
-# class Report(StructuredNode):
-#  	report_path=StringProperty()
-#  	report_source=StringProperty()
-#  	report_size=StringProperty()
-
-#  	# Relationships
-#  	is_statisticalreport=RelationshipTo(StatisticalReport, 'IS')
-
-# class RefelctionStructureFactors(StructuredNode):
-#  	rsf_source=StringProperty()
-#  	rsf_filesize=StringProperty()
-#  	rsf_filepath=StringProperty()
-
-#  	# Relationships
-#  	input_as_ref=RelationshipTo(DPStep, 'INPUT_AS_REFERENCE')
-#  	input_of=RelationshipTo(DPStep, 'INPUT')
-#  	generates_mtz=RelationshipTo(MTZfile, 'GENERATES')
-#  	generates_scalepack=RelationshipTo(ScalepackFile, 'GENERATES')
-#  	labelled=RelationshipTo(Reference, 'LABELLED')
-#  	belongs=RelationshipTo(Construct, 'BELONGS')
-
-# class DPStep(StructuredNode):
- 	
-#  	# Relationships
-#  	is_fitting=RelationshipTo(LigandsFitting, 'IS')
-#  	is_refinement=RelationshipTo(Refinement, 'IS')
-#  	is_postrefinement=RelationshipTo(PostRefinement, 'IS')
-#  	is_reductionscaling=RelationshipTo(ReductionScaling, 'IS')
-#  	with_tool_1=RelationshipTo(autoPROC, 'WITH')
-#  	with_tool_2=RelationshipTo(Rhofit, 'WITH')
-#  	with_tool_3=RelationshipTo(Buster, 'WITH')
-#  	genereates_report=RelationshipTo(Report, 'GENERATES')
-#  	# generates_coordinates=RelationshipTo(Coordinates, 'GENERATES')
-#  	generates_rsf=RelationshipTo(RefelctionStructureFactors, 'GENERATES')
-
-# class Coordinates(StructuredNode):
-#  	coordinates_source=StringProperty(unique_index=True, required=True)
-#  	coordinates_filesize=StringProperty(unique_index=True, required=True)
-#  	coordinates_filepath=StringProperty(unique_index=True, required=True)
-
-#  	# Relationships
-#  	input_as_ref=RelationshipTo(DPStep, 'INPUT_AS_REFERENCE')
-#  	input_of=RelationshipTo(DPStep, 'INPUT')
-#  	has_pdb=RelationshipTo(PDBFile, 'HAS')
-#  	has_mmcif=RelationshipTo(mmCIFFile, 'HAS')
-#  	belongs=RelationshipTo(Construct, 'BELONGS')
-#  	labelled=RelationshipTo(Reference, 'LABELLED')
-
-
-# class DataCollection (StructuredNode):
-#  	collection_type=StringProperty()
-#  	collection_size=StringProperty()
-
-#  	# Relationships
-#  	genereates_dataset=RelationshipTo(Datatset, 'GENERATES')
-
-# class Datatset(StructuredNode):
-#  	dataset_file_no=IntegerProperty()
-#  	dataset_size=StringProperty()
-
-#  	# Relationships
-#  	input_of=RelationshipTo(DPStep, 'INPUT')
-#  	stored=RelationshipTo(StorageHost, 'STORED')
-#  	belongs=RelationshipTo(Construct, 'BELONGS')
-
-# class mmCIFFile(StructuredNode):
-# 	uid=UniqueIdProperty()
-# 	coordinates_filetype=StringProperty(unique_index=True, required=True)
-
-# class PDBFile(StructuredNode):
-# 	uid=UniqueIdProperty()
-# 	coordinates_filetype=StringProperty(unique_index=True, required=True)
-
-# class MTZfile(StructuredNode):
-# 	uid=UniqueIdProperty()
-# 	rsf_filetype = StringProperty(unique_index=True, required=True)
-
-# class ScalepackFile(StructuredNode):
-# 	uid=UniqueIdProperty()
-# 	rsf_filetype = StringProperty(unique_index=True, required=True)
-
-# class Reference(StructuredNode):
-# 	uid=UniqueIdProperty()
-
-# class OCF(StructuredNode):
-	
-# 	# Relationships
-# 	has_rsf=RelationshipTo(RefelctionStructureFactors, 'HAS')
-# 	has_coordinates=RelationshipTo(Coordinates, 'HAS')
-
-# class Construct(StructuredNode):
-	
-# 	# Relationships
-# 	has_ocf=RelationshipTo(OCF, 'HAS')
-# 	has_storage_host=RelationshipTo(StorageHost, 'HAS')
-# 	has_computing_host=RelationshipTo(ComputingHost, 'HAS')
-
-
-# class Ligand(StructuredNode):
-	 
-# 	# Relationships
-#  	associated=RelationshipTo(Datatset, 'ASSOCIATED')
-

src/dataproc/settings.py

-"""
-Django settings for newapi project.
-
-Generated by 'django-admin startproject' using Django 3.1.6.
-
-For more information on this file, see
-https://docs.djangoproject.com/en/3.1/topics/settings/
-
-For the full list of settings and their values, see
-https://docs.djangoproject.com/en/3.1/ref/settings/
-"""
-
-from pathlib import Path
-import os 
-from decouple import config
-
-# Build paths inside the project like this: BASE_DIR / 'subdir'.
-BASE_DIR = Path(__file__).resolve().parent.parent
-
-
-# Quick-start development settings - unsuitable for production
-# See https://docs.djangoproject.com/en/3.1/howto/deployment/checklist/
-
-# SECURITY WARNING: keep the secret key used in production secret!
-SECRET_KEY = '=013nqbp3o8hr9e*it$b1um^%ke*uxqvt5qnp=xe6@^20a)d!b'
-
-# SECURITY WARNING: don't run with debug turned on in production!
-DEBUG = True
-
-ALLOWED_HOSTS = []
-
-
-# Application definition
-
-INSTALLED_APPS = [
-    
-    #django apps
-    'django.contrib.admin',
-    'django.contrib.auth',
-    'django.contrib.contenttypes',
-    'django.contrib.sessions',
-    'django.contrib.messages',
-    'django.contrib.staticfiles',
-    'django_neomodel'
-    'rest_framework'
-
-
-    #My apps
-    'dataproc',
-]
-
-MIDDLEWARE = [
-    'django.middleware.security.SecurityMiddleware',
-    'django.contrib.sessions.middleware.SessionMiddleware',
-    'django.middleware.common.CommonMiddleware',
-    'django.middleware.csrf.CsrfViewMiddleware',
-    'django.contrib.auth.middleware.AuthenticationMiddleware',
-    'django.contrib.messages.middleware.MessageMiddleware',
-    'django.middleware.clickjacking.XFrameOptionsMiddleware',
-]
-
-ROOT_URLCONF = 'newapi.urls'
-
-TEMPLATES = [
-    {
-        'BACKEND': 'django.template.backends.django.DjangoTemplates',
-        'DIRS': [],
-        'APP_DIRS': True,
-        'OPTIONS': {
-            'context_processors': [
-                'django.template.context_processors.debug',
-                'django.template.context_processors.request',
-                'django.contrib.auth.context_processors.auth',
-                'django.contrib.messages.context_processors.messages',
-            ],
-        },
-    },
-]
-
-WSGI_APPLICATION = 'newapi.wsgi.application'
-
-
-# Database
-# https://docs.djangoproject.com/en/3.1/ref/settings/#databases
-
-DATABASES = {
-    'default': {
-        'ENGINE': 'django.db.backends.sqlite3',
-        'NAME': BASE_DIR / 'db.sqlite3',
-    }
-}
-
-NEOMODEL_NEO4J_BOLT_URL = os.environ.get('NEO4J_BOLT_URL','bolt://neo4j:neo4@localhost:7687')
-
-
-
-# Password validation
-# https://docs.djangoproject.com/en/3.1/ref/settings/#auth-password-validators
-
-AUTH_PASSWORD_VALIDATORS = [
-    {
-        'NAME': 'django.contrib.auth.password_validation.UserAttributeSimilarityValidator',
-    },
-    {
-        'NAME': 'django.contrib.auth.password_validation.MinimumLengthValidator',
-    },
-    {
-        'NAME': 'django.contrib.auth.password_validation.CommonPasswordValidator',
-    },
-    {
-        'NAME': 'django.contrib.auth.password_validation.NumericPasswordValidator',
-    },
-]
-
-
-# Internationalization
-# https://docs.djangoproject.com/en/3.1/topics/i18n/
-
-LANGUAGE_CODE = 'en-us'
-
-TIME_ZONE = 'UTC'
-
-USE_I18N = True
-
-USE_L10N = True
-
-USE_TZ = True
-
-
-# Static files (CSS, JavaScript, Images)
-# https://docs.djangoproject.com/en/3.1/howto/static-files/
-
-STATIC_URL = '/static/'

src/dataproc/tests/test_urls.py

-from django.test import SimpleTestCase
-from django.urls import reverse, resolve
-
-class TestUrls(SimpleTestCase):
-
-	def {test_url}(self):
-		url = reverse('{url_route}')
-		self.assertEquals(resolve(url).func, )
-