New folders

mynewapi/models.py

-from django.db import models
-from neomodel import StructuredNode, StringProperty, IntegerProperty,UniqueIdProperty, RelationshipTo, DateTimeProperty, BooleanProperty
-
-# class City(StructuredNode):
-#     code = StringProperty(unique_index=True, required=True)
-#     name = StringProperty(index=True, default="city")
-
-#####################################
-# Nodes and properties of the model #
-#####################################
-
-class LigandsFitting(StructuredNode):
-	uid=UniqueIdProperty()
-	dp_step_name = StringProperty()
-	created_at=DateTimeProperty()
-	updated_at=DateTimeProperty()
-	pipedream_id=IntegerProperty()
-	score=IntegerProperty()
-	fitting_success=BooleanProperty()
-
-class Refinement(StructuredNode):
-	uid=UniqueIdProperty()
-	dp_step_name=StringProperty()
-	created_at=DateTimeProperty()
-	updated_at=DateTimeProperty()
-
-class PostRefinement(StructuredNode):
-	uid=UniqueIdProperty()
-	dp_step_name=StringProperty()
-	pipedream_id=IntegerProperty()
-	created_at=DateTimeProperty()
-	updated_at=DateTimeProperty()
-
-class ReductionScaling(StructuredNode):
-	uid=UniqueIdProperty()
-	dp_step_name=StringProperty()
-	created_at=DateTimeProperty()
-	updated_at=DateTimeProperty()
-
-class autoPROC(StructuredNode):
-	uid=UniqueIdProperty()
-	tool_name=StringProperty()
-
-class Buster(StructuredNode):
-	uid=UniqueIdProperty()
-	tool_name=StringProperty()
-
-class Rhofit(StructuredNode):
-	uid=UniqueIdProperty()
-	tool_name=StringProperty()
-
-class StatisticalReport(StructuredNode):
-	uid=UniqueIdProperty()
-	report_name=StringProperty()
-
-class ComputingHost(StructuredNode):
-	ch_softwares=StringProperty()
-	ch_softwares_number=IntegerProperty()
-
-class StorageHost(StructuredNode):
-	sh_files=StringProperty()
-	sh_files_number=IntegerProperty()
-
-##########################################################################
-
-class Report(StructuredNode):
- 	report_path=StringProperty()
- 	report_source=StringProperty()
- 	report_size=StringProperty()
-
- 	# Relationships
- 	is_statisticalreport=RelationshipTo(StatisticalReport, 'IS')
-
-class RefelctionStructureFactors(StructuredNode):
- 	rsf_source=StringProperty()
- 	rsf_filesize=StringProperty()
- 	rsf_filepath=StringProperty()
-
- 	# Relationships
- 	input_as_ref=RelationshipTo(DPStep, 'INPUT_AS_REFERENCE')
- 	input_of=RelationshipTo(DPStep, 'INPUT')
- 	generates_mtz=RelationshipTo(MTZfile, 'GENERATES')
- 	generates_scalepack=RelationshipTo(ScalepackFile, 'GENERATES')
- 	labelled=RelationshipTo(Reference, 'LABELLED')
- 	belongs=RelationshipTo(Construct, 'BELONGS')
-
-class DPStep(StructuredNode):
- 	
- 	# Relationships
- 	is_fitting=RelationshipTo(LigandsFitting, 'IS')
- 	is_refinement=RelationshipTo(Refinement, 'IS')
- 	is_postrefinement=RelationshipTo(PostRefinement, 'IS')
- 	is_reductionscaling=RelationshipTo(ReductionScaling, 'IS')
- 	with_tool_1=RelationshipTo(autoPROC, 'WITH')
- 	with_tool_2=RelationshipTo(Rhofit, 'WITH')
- 	with_tool_3=RelationshipTo(Buster, 'WITH')
- 	genereates_report=RelationshipTo(Report, 'GENERATES')
- 	# generates_coordinates=RelationshipTo(Coordinates, 'GENERATES')
- 	generates_rsf=RelationshipTo(RefelctionStructureFactors, 'GENERATES')
-
-class Coordinates(StructuredNode):
- 	coordinates_source=StringProperty(unique_index=True, required=True)
- 	coordinates_filesize=StringProperty(unique_index=True, required=True)
- 	coordinates_filepath=StringProperty(unique_index=True, required=True)
-
- 	# Relationships
- 	input_as_ref=RelationshipTo(DPStep, 'INPUT_AS_REFERENCE')
- 	input_of=RelationshipTo(DPStep, 'INPUT')
- 	has_pdb=RelationshipTo(PDBFile, 'HAS')
- 	has_mmcif=RelationshipTo(mmCIFFile, 'HAS')
- 	belongs=RelationshipTo(Construct, 'BELONGS')
- 	labelled=RelationshipTo(Reference, 'LABELLED')
-
-
-class DataCollection (StructuredNode):
- 	collection_type=StringProperty()
- 	collection_size=StringProperty()
-
- 	# Relationships
- 	genereates_dataset=RelationshipTo(Datatset, 'GENERATES')
-
-class Datatset(StructuredNode):
- 	dataset_file_no=IntegerProperty()
- 	dataset_size=StringProperty()
-
- 	# Relationships
- 	input_of=RelationshipTo(DPStep, 'INPUT')
- 	stored=RelationshipTo(StorageHost, 'STORED')
- 	belongs=RelationshipTo(Construct, 'BELONGS')
-
-class mmCIFFile(StructuredNode):
-	uid=UniqueIdProperty()
-	coordinates_filetype=StringProperty(unique_index=True, required=True)
-
-class PDBFile(StructuredNode):
-	uid=UniqueIdProperty()
-	coordinates_filetype=StringProperty(unique_index=True, required=True)
-
-class MTZfile(StructuredNode):
-	uid=UniqueIdProperty()
-	rsf_filetype = StringProperty(unique_index=True, required=True)
-
-class ScalepackFile(StructuredNode):
-	uid=UniqueIdProperty()
-	rsf_filetype = StringProperty(unique_index=True, required=True)
-
-class Reference(StructuredNode):
-	uid=UniqueIdProperty()
-
-class OCF(StructuredNode):
-	
-	# Relationships
-	has_rsf=RelationshipTo(RefelctionStructureFactors, 'HAS')
-	has_coordinates=RelationshipTo(Coordinates, 'HAS')
-
-class Construct(StructuredNode):
-	
-	# Relationships
-	has_ocf=RelationshipTo(OCF, 'HAS')
-	has_storage_host=RelationshipTo(StorageHost, 'HAS')
-	has_computing_host=RelationshipTo(ComputingHost, 'HAS')
-
-
-class Ligand(StructuredNode):
-	 
-	# Relationships
- 	associated=RelationshipTo(Datatset, 'ASSOCIATED')
-

mynewapi/tests.py

-from django.test import TestCase
-
-# Create your tests here.

newapi/settings.py → myservice/settings.py

@@ -32,15 +32,20 @@ ALLOWED_HOSTS = []
 # Application definition
 
 INSTALLED_APPS = [
+    
+    #django apps
     'django.contrib.admin',
     'django.contrib.auth',
     'django.contrib.contenttypes',
     'django.contrib.sessions',
     'django.contrib.messages',
     'django.contrib.staticfiles',
-
-    'mynewapi.apps.MynewapiConfig',
     'django_neomodel'
+    'rest_framework'
+
+
+    #My apps
+    'api.apps.apiConfig',
 ]
 
 MIDDLEWARE = [