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Commit a1d50bd8 authored by Christian Arnold's avatar Christian Arnold
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change multiqc config file back to an absolute path

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......@@ -2130,7 +2130,7 @@ if nSamplesUnique > 1 and doPeakCalling:
message: "{ruleDisplayMessage}Calculate PCA and sample correlation for consensus peaks for all peak files with the script {script_PCA}..."
threads: 1
params:
GCString = GCBiasStr,
GCString = GCBiasStr
#minOverlapValues = ",".join(map(str, rangeOverlap))
script: script_PCA
......@@ -2475,8 +2475,10 @@ rule multiqc:
outputDir = lambda wildcards, output: os.path.dirname(output.report),
basename = lambda wildcards, output: os.path.basename(output.report),
rootDir = ROOT_dir,
config = workflow.source_path("config/multiqc_config.yaml") # see https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#snakefiles-aux-source-files
#config = workflow.source_path("config/multiqc_config.yaml") # see https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#snakefiles-aux-source-files
config = "/g/zaugg/carnold/Projects/AtacSeq/src/config/multiqc_config.yaml" # see https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#snakefiles-aux-source-files
conda: "condaEnvironments/multiqc.yaml"
singularity: singularity_conda
shell:
"""
......
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