Changed path to Snakefile

example/input/params.sh

@@ -13,7 +13,7 @@
 configFile="config.yaml"
 
 # Snakefile to use
-snakefile="/g/scb2/zaugg/carnold/Projects/AtacSeq/src/Snakemake/dev/Snakefile"
+snakefile="/g/scb2/zaugg/carnold/Projects/AtacSeq/src/Snakefile"
 
 #######################
 # PERFORMANCE OPTIONS #
@@ -89,7 +89,7 @@ runAlsoDownstreamRules=true
 rerunIncomplete=true
 
 # Should the WHOLE pipeline be rerun? use with care, setting this to true will rerun everything
-forceRerunAll=false
+forceRerunAll=true
 
 # Should Snakemake abort after the first error or continue running?
 abortAfterFirstError=false

example/templates/params.sh

@@ -13,7 +13,7 @@
 configFile="config.yaml"
 
 # Snakefile to use
-snakefile="/g/scb2/zaugg/carnold/Projects/AtacSeq/src/Snakemake/Snakefile"
+snakefile="/g/scb2/zaugg/carnold/Projects/AtacSeq/src/Snakefile"
 
 #######################
 # PERFORMANCE OPTIONS #