Added missing rules to cluster.config for enhanced customization

example/input/cluster.json

@@ -39,6 +39,10 @@
     "memory": 10000,
     "maxTime": "10:00:00"
   },
+  "trimming_SE": {
+    "memory": 10000,
+    "maxTime": "10:00:00"
+  },
   "fastqc_AT": {
     "memory": 10000,
     "maxTime": "2:00:00"
@@ -64,7 +68,7 @@
     "maxTime": "5:00:00"
   },
   "Picard_ReorderSam": {
-    "memory": 10000,
+    "memory": 25000,
     "maxTime": "5:00:00"
   },
   "GATK_baseRecalibration1": {
@@ -190,5 +194,34 @@
   "multiqc": {
     "memory": 10000,
     "maxTime": "5:00:00"
+  },
+  "produceConsensusPeaks": {
+    "memory": 30000,
+    "maxTime": "15:00:00"
+  },
+  "countReadsPeaks": {
+    "memory": 25000,
+    "maxTime": "10:00:00"
+  },
+  "consensusPeaksPCA_correlation": {
+    "memory": 20000,
+    "maxTime": "10:00:00"
+  },
+  "annotatePeaks_individual": {
+    "memory": 15000,
+    "maxTime": "5:00:00"
+  },
+  "annotatePeaks_consensus": {
+    "memory": 15000,
+    "maxTime": "5:00:00"
+  },
+  "deeptools_plotEnrichment_frip_individual": {
+    "memory": 20000,
+    "maxTime": "10:00:00"
+  },
+  "deeptools_plotEnrichment_frip_consensusPeaks": {
+    "memory": 20000,
+    "maxTime": "10:00:00"
   }
+
 }

example/templates/cluster.json

@@ -39,6 +39,10 @@
     "memory": 10000,
     "maxTime": "10:00:00"
   },
+  "trimming_SE": {
+    "memory": 10000,
+    "maxTime": "10:00:00"
+  },
   "fastqc_AT": {
     "memory": 10000,
     "maxTime": "2:00:00"
@@ -64,7 +68,7 @@
     "maxTime": "5:00:00"
   },
   "Picard_ReorderSam": {
-    "memory": 10000,
+    "memory": 25000,
     "maxTime": "5:00:00"
   },
   "GATK_baseRecalibration1": {
@@ -190,5 +194,34 @@
   "multiqc": {
     "memory": 10000,
     "maxTime": "5:00:00"
+  },
+  "produceConsensusPeaks": {
+    "memory": 30000,
+    "maxTime": "15:00:00"
+  },
+  "countReadsPeaks": {
+    "memory": 25000,
+    "maxTime": "10:00:00"
+  },
+  "consensusPeaksPCA_correlation": {
+    "memory": 20000,
+    "maxTime": "10:00:00"
+  },
+  "annotatePeaks_individual": {
+    "memory": 15000,
+    "maxTime": "5:00:00"
+  },
+  "annotatePeaks_consensus": {
+    "memory": 15000,
+    "maxTime": "5:00:00"
+  },
+  "deeptools_plotEnrichment_frip_individual": {
+    "memory": 20000,
+    "maxTime": "10:00:00"
+  },
+  "deeptools_plotEnrichment_frip_consensusPeaks": {
+    "memory": 20000,
+    "maxTime": "10:00:00"
   }
+
 }