configFile~

data/IVAN/test1.R1.txt.gz

data/IVAN/test1.R2.txt.gz

data/IVAN/test2.R1.txt.gz

data/IVAN/test2.R2.txt.gz

data/pairedEnd/configFile

data/pairedEnd_SRA/configFile

data/pairedEnd_SRA/runPipeline.R.log

doc/20160127_ATAC seq_experimental design.docx

src/Snakemake/Snakefile

src/Snakemake/Snakefile.sh

src/Snakemake/config.json

src/Snakemake/config.json.README

src/Snakemake/src/aut_stats.R

src/Snakemake/src/config.json

src/Snakemake/src/pipeline.sh

src/bash/adjustReadStartPos.sh

src/bash/filterByCigar.sh

src/bash/filterReadsByChromosomes.sh