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Created with Raphaël 2.2.017Jan4Dec6Oct28Jun25Apr24Mar232111Oct14Sep14Jun10230May17928Apr2728Feb24232211Jan1030Nov25221927May24Aug23Aug31May9Oct427Jun201225Oct14Jun25Jan19Dec924Nov221121OctChanged queue name due to embl SLURM changesmastermasterAdaptations for edge cases and analyses with different genomes, removed the node constraint in the cluster profileupdated readmeupdated READMECleanupDeleted one fileDeleted one fileconfig file clarificationsCleaning filesDoc updatesREADME updatesmodified READMEFixing macs2 related error when no input control is specifiedRemoved /g/scb2 instances and replaced with /g/zauggupdated contaienr URL and other small changesmiscchange multiqc config file back to an absolute pathmiscmake PCA script more failure proofCreate dirs if they dont exist yetSmall bugfixes related to ChIP-Seq input control and small number of peaks that crash ChIPSeekerAdded /g/zaugg to params.sh templatesUpdated Snakemake wrapperSmall fixesUpdate functions.RFix for 0 consensus peaks resulting from DiffBind column renameAdded missing rules to cluster.config for enhanced customizationRemoved the replicate_No column as requirement from the sample fileFixed bug with new DiffBind that causes 0 consensus peaksFixed typoFixed an issue with CIP-seq when no control files were givenFixed an issue where the annotation rule fails for edge cases where the peak file is emptyremoved groups, they seem to cause additional /scratch caching issues. Removed until resolved what causes thisFixed a bug for single-end data that causes the stats rule to failChanged the default for restart times: Set to 1 by default nowBugfixesReversed change from yesterday, scripts section was accidentally removedFix typofix_maxfix_maxRemoved empty and obselete scripts: parameter from configsModified the snakefile to make sure that a local copy should be used