Commits · dev · Christian Arnold / ATACSeq_Snakemake

Feb 28, 2022
- Added fix for analyses with just 1 sample & param.sh snakefile clarifications · d29bf3cd
  Christian Arnold authored 3 years ago
  
  d29bf3cd
Feb 24, 2022
- Updated snakemake version to 6.4.0 due to workflow.source_path · 776fc389
  Christian Arnold authored 3 years ago
  
  776fc389
Feb 23, 2022
- Small changes in README · 20f5f4a3
  Christian Arnold authored 3 years ago
  
  20f5f4a3
- Small reorganization and removal of picard command line argument · 09d80332
  Christian Arnold authored 3 years ago
  
  09d80332
- Changed path to Snakefile · a285ff88
  Christian Arnold authored 3 years ago
  
  a285ff88
- Singularity changes · 19a85189
  Christian Arnold authored 3 years ago
  
  19a85189
Feb 22, 2022
- Update README.md · bae122dd
  Christian Arnold authored 3 years ago
  
  bae122dd
- Updated README · d60dcf0f
  Christian Arnold authored 3 years ago
  
  d60dcf0f
- Cleanup · 81b32ed1
  Christian Arnold authored 3 years ago
  
  81b32ed1
- Major update, preparing new ATAC-Seq pipeline version · 57f635d7
  Christian Arnold authored 3 years ago
  
  57f635d7
Jan 10, 2022
- edited consensus peak script to exclude control samples · a5896961
  Rim Moussa authored 3 years ago
  
  a5896961
- chipseq changes · 1e28aa2d
  Rim Moussa authored 3 years ago
  
  1e28aa2d
Nov 30, 2021
- Bugfixes and additions for dev version · 68bd84f5
  Christian Arnold authored 3 years ago
  
  68bd84f5
Nov 25, 2021
- Added examples/dev/input to Git · f399a0e5
  Christian Arnold authored 3 years ago
  
  f399a0e5
- Changed repo structure and divided templates into dev and stable, few other small changes for dev · 84562a19
  Christian Arnold authored 3 years ago
  
  84562a19
Nov 22, 2021
- Merge branch 'dt-updates' into 'master' · 0770a204
  Christian Arnold authored 3 years ago
  
  feature updates See merge request !2
  0770a204
- Merge branch 'master' into 'dt-updates' · afa73022
  Christian Arnold authored 3 years ago
  
  # Conflicts: # src/Snakemake/dev/R/consensusPeaks.R # src/Snakemake/dev/R/functions.R # src/Snakemake/dev/Snakefile
  afa73022
- various small changes before merging Rim's update for dev · 76f89bed
  Christian Arnold authored 3 years ago
  
  76f89bed
Nov 19, 2021
- added SE mode, added ChIPseq data type, other minor changes · 26b15b7a
  Rim Moussa authored 3 years ago
  
  26b15b7a
May 27, 2021
- Updated templates and other minor changes · d11203cf
  Christian Arnold authored 3 years ago
  
  d11203cf
Aug 24, 2020
- Changes to cluster.json · a1da775e
  Christian Arnold authored 4 years ago
  
  a1da775e
- General update · aa605743
  Christian Arnold authored 4 years ago
  
  aa605743
Aug 23, 2019
- Added the file runSnakemake.sh for an example call to Snakemake with Singularity · be1e27f6
  Christian Arnold authored 5 years ago
  
  be1e27f6
- Cleanup · d09c49de
  Christian Arnold authored 5 years ago
  
  d09c49de
- Cleanup · 17701599
  Christian Arnold authored 5 years ago
  
  17701599
- Update README · d0ede272
  Christian Arnold authored 5 years ago
  
  d0ede272
- Add LICENSE · 62b8ae10
  Christian Arnold authored 5 years ago
  
  62b8ae10
- Added example data · b9119d37
  Christian Arnold authored 5 years ago
  
  b9119d37
- Various small changes · 119127d1
  Christian Arnold authored 5 years ago
  
  119127d1
May 31, 2019
- Many minor changes · bd9d91dd
  Christian Arnold authored 5 years ago
  
  bd9d91dd
Oct 09, 2018
- Updated template files · 86f39aac
  Christian Arnold authored 6 years ago
  
  86f39aac
- Adjusted bamCoverage rule for deepTools version >=3. For older deepTool... · 89435ec8
  Christian Arnold authored 6 years ago
  
  Adjusted bamCoverage rule for deepTools version >=3. For older deepTool versions, it will not work anymore.
  89435ec8
Oct 04, 2018
- cleanup · e4451260
  Christian Arnold authored 6 years ago
  
  e4451260
- Updated documentation · 1b8e52fc
  Christian Arnold authored 6 years ago
  
  1b8e52fc
- Various updates and improvements · 0a4ef72a
  Christian Arnold authored 6 years ago
  
  0a4ef72a
Jun 27, 2018
- Updated Pipeline · 15f00315
  Christian Arnold authored 6 years ago
  
  15f00315
Jun 20, 2018
- Updated documentation and examples · a6dd8563
  Christian Arnold authored 6 years ago
  
  a6dd8563
Jun 12, 2018
- Bigger update, provided templates, updated code · a1e44da9
  Christian Arnold authored 6 years ago
  
  a1e44da9
Oct 25, 2017
- SLURM customization · bcb839cd
  Christian Arnold authored 7 years ago
  
  bcb839cd
- cleanup2 · ffb26679
  Christian Arnold authored 7 years ago
  
  ffb26679