Skip to content
Snippets Groups Projects
Commit 610dcf33 authored by Nicolas Descostes's avatar Nicolas Descostes
Browse files

try including file

parent 9a81fc6b
No related branches found
No related tags found
4 merge requests!13fasterq hidden macs2 picard,!12deeptools last version,!11bowtie2,!10bowtie2
Pipeline #32227 passed
Hide whitespace changes
Inline Side-by-side
.gitlab-ci.yml
+ 23
− 54
View file @ 610dcf33
...@@ -30,35 +30,9 @@ image: ...@@ -30,35 +30,9 @@ image:
- singularity build container.sif $RECIPE_PATH/Singularity.$BASENAME-$TAG - singularity build container.sif $RECIPE_PATH/Singularity.$BASENAME-$TAG
- singularity push --docker-username gitlab-ci-token --docker-password $CI_JOB_TOKEN container.sif oras://"$CI_REGISTRY_IMAGE"/$BASENAME:$TAG - singularity push --docker-username gitlab-ci-token --docker-password $CI_JOB_TOKEN container.sif oras://"$CI_REGISTRY_IMAGE"/$BASENAME:$TAG
#####################
## Submission area
#####################
#fastqc-0119cv7-test:
# extends: .templateTest
# variables:
# BASENAME: fastqc
# TAG: 0119cv7
# RECIPE_PATH: recipes/quality-control/fastqc/
#fastqc-0119cv8-test:
# extends: .templateTest
# variables:
# BASENAME: fastqc
# TAG: 0119cv8
# RECIPE_PATH: recipes/quality-control/fastqc/
#fastqc-0119cv6-test:
# extends: .templateTest
# variables:
# BASENAME: fastqc
# TAG: 0119cv6
# RECIPE_PATH: recipes/quality-control/fastqc/
##################### #####################
# DeepLabCut # Image analysis
##################### #####################
#deeplabcut-2202-test: #deeplabcut-2202-test:
...@@ -83,33 +57,28 @@ deeplabcut-2202-builddeploy: ...@@ -83,33 +57,28 @@ deeplabcut-2202-builddeploy:
## Quality control ## Quality control
##################### #####################
fastqc-0119cv7-builddeploy: #fastqc-0119cv7-test:
extends: .templateBuildDeploy # extends: .templateTest
variables: # variables:
BASENAME: fastqc # BASENAME: fastqc
TAG: 0119cv7 # TAG: 0119cv7
RECIPE_PATH: recipes/quality-control/fastqc # RECIPE_PATH: recipes/quality-control/fastqc/
only:
changes:
- recipes/quality-control/fastqc/Singularity.fastqc-0119cv7
fastqc-0119cv8-builddeploy: #fastqc-0119cv8-test:
extends: .templateBuildDeploy # extends: .templateTest
variables: # variables:
BASENAME: fastqc # BASENAME: fastqc
TAG: 0119cv8 # TAG: 0119cv8
RECIPE_PATH: recipes/quality-control/fastqc # RECIPE_PATH: recipes/quality-control/fastqc/
only:
changes:
- recipes/quality-control/fastqc/Singularity.fastqc-0119cv8
fastqc-0119cv6-builddeploy: #fastqc-0119cv6-test:
extends: .templateBuildDeploy # extends: .templateTest
variables: # variables:
BASENAME: fastqc # BASENAME: fastqc
TAG: 0119cv6 # TAG: 0119cv6
RECIPE_PATH: recipes/quality-control/fastqc # RECIPE_PATH: recipes/quality-control/fastqc/
only:
changes:
- recipes/quality-control/fastqc/Singularity.fastqc-0119cv6 include:
- local: yaml-files/quality-control/fastqc-deploy.yaml
yaml-files/quality-control/fastqc-deploy.yaml 0 → 100644
+ 30
− 0
View file @ 610dcf33
fastqc-0119cv7-builddeploy:
extends: .templateBuildDeploy
variables:
BASENAME: fastqc
TAG: 0119cv7
RECIPE_PATH: recipes/quality-control/fastqc
only:
changes:
- recipes/quality-control/fastqc/Singularity.fastqc-0119cv7
fastqc-0119cv8-builddeploy:
extends: .templateBuildDeploy
variables:
BASENAME: fastqc
TAG: 0119cv8
RECIPE_PATH: recipes/quality-control/fastqc
only:
changes:
- recipes/quality-control/fastqc/Singularity.fastqc-0119cv8
fastqc-0119cv6-builddeploy:
extends: .templateBuildDeploy
variables:
BASENAME: fastqc
TAG: 0119cv6
RECIPE_PATH: recipes/quality-control/fastqc
only:
changes:
- recipes/quality-control/fastqc/Singularity.fastqc-0119cv6
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment