replace by main

.gitlab-ci.yml

@@ -45,10 +45,16 @@ include:
   - local: "yaml-files/image-analysis/deeplabcut-deploy.yaml"
 
 #####################
-# Mapping
+# Quality control
 #####################
 
 include:
   - local: "yaml-files/quality-control/fastqc-deploy.yaml"
-  - local: "yaml-files/quality-control/bowtie2-deploy.yaml"
-  
\ No newline at end of file
+
+
+#####################
+# Mapping
+#####################
+
+include:
+  - local: "yaml-files/mapping/bowtie2-deploy.yaml"

recipes/mapping/bowtie2/Singularity.bowtie2-241cv1

@@ -10,3 +10,4 @@ From: biocontainers/bowtie2:v2.4.1_cv1
 
 %labels
     Author Nicolas Descostes
+

recipes/mapping/bowtie2/Singularity.bowtie2-245

@@ -10,3 +10,4 @@ From: quay.io/biocontainers/bowtie2:2.4.5--py36hfca12d5_2
 
 %labels
     Author Nicolas Descostes
+

yaml-files/mapping/bowtie2-deploy.yaml

+bowtie2-245-builddeploy:
+  extends: .templateBuildDeploy
+  variables:
+    BASENAME: bowtie2
+    TAG: 245
+    RECIPE_PATH: recipes/mapping/bowtie2
+  only:
+    changes:
+      - recipes/mapping/bowtie2/Singularity.bowtie2-245
+
+bowtie2-241cv1-builddeploy:
+  extends: .templateBuildDeploy
+  variables:
+    BASENAME: bowtie2
+    TAG: 241cv1
+    RECIPE_PATH: recipes/mapping/bowtie2
+  only:
+    changes:
+      - recipes/mapping/bowtie2/Singularity.bowtie2-241cv1
+

yaml-files/mapping/bowtie2-test.backup

+bowtie2-241cv1-test:
+  extends: .templateTest
+  variables:
+    BASENAME: bowtie2
+    TAG: 241cv1
+    RECIPE_PATH: recipes/quality-control/bowtie2
+
+bowtie2-245-test:
+  extends: .templateTest
+  variables:
+    BASENAME: bowtie2
+    TAG: 245
+    RECIPE_PATH: recipes/quality-control/bowtie2