replace by main

.gitlab-ci.yml

@@ -36,20 +36,6 @@ image:
 
 ## WRITE YOUR TEST RULE HERE AFTER BRANCHING ON SUBMISSION AND CREATE A MERGE REQUEST
 
-bowtie2-241cv1-test:
-  extends: .templateTest
-  variables:
-    BASENAME: bowtie2
-    TAG: 241cv1
-    RECIPE_PATH: recipes/quality-control/bowtie2
-
-bowtie2-245-test:
-  extends: .templateTest
-  variables:
-    BASENAME: bowtie2
-    TAG: 245
-    RECIPE_PATH: recipes/quality-control/bowtie2
-
 
 #####################
 # Image analysis
@@ -64,3 +50,5 @@ include:
 
 include:
   - local: "yaml-files/quality-control/fastqc-deploy.yaml"
+  - local: "yaml-files/quality-control/bowtie2-deploy.yaml"
+  
\ No newline at end of file

recipes/quality-control/bowtie2/Singularity.bowtie2-241cv1

@@ -10,3 +10,4 @@ From: biocontainers/bowtie2:v2.4.1_cv1
 
 %labels
     Author Nicolas Descostes
+

recipes/quality-control/bowtie2/Singularity.bowtie2-245

@@ -10,3 +10,4 @@ From: quay.io/biocontainers/bowtie2:2.4.5--py36hfca12d5_2
 
 %labels
     Author Nicolas Descostes
+

yaml-files/quality-control/bowtie2-deploy.yaml

+bowtie2-245-builddeploy:
+  extends: .templateBuildDeploy
+  variables:
+    BASENAME: bowtie2
+    TAG: 245
+    RECIPE_PATH: recipes/quality-control/bowtie2
+  only:
+    changes:
+      - recipes/quality-control/bowtie2/Singularity.bowtie2-245
+
+bowtie2-241cv1-builddeploy:
+  extends: .templateBuildDeploy
+  variables:
+    BASENAME: bowtie2
+    TAG: 241cv1
+    RECIPE_PATH: recipes/quality-control/bowtie2
+  only:
+    changes:
+      - recipes/quality-control/bowtie2/Singularity.bowtie2-241cv1
+

yaml-files/quality-control/bowtie2-test.backup

+bowtie2-241cv1-test:
+  extends: .templateTest
+  variables:
+    BASENAME: bowtie2
+    TAG: 241cv1
+    RECIPE_PATH: recipes/quality-control/bowtie2
+
+bowtie2-245-test:
+  extends: .templateTest
+  variables:
+    BASENAME: bowtie2
+    TAG: 245
+    RECIPE_PATH: recipes/quality-control/bowtie2