remove parallelfastqdump

.gitlab-ci.yml

@@ -36,13 +36,6 @@ image:
 
 ## WRITE YOUR TEST RULE HERE AFTER BRANCHING ON SUBMISSION AND CREATE A MERGE REQUEST
 
-parallelfastqdump-063-test:
-  extends: .templateTest
-  variables:
-    BASENAME: parallelfastqdump
-    TAG: 063
-    RECIPE_PATH: recipes/fastq-operations/parallelfastqdump
-
 hiddendomains-31-test:
   extends: .templateTest
   variables:

recipes/fastq-operations/parallelfastqdump/Singularity.parallelfastqdump-063

-BootStrap: docker
-From: ubuntu:bionic
-
-%help
-    This singularity install parallel-fastq-dump v0.6.3.
-
-%post
-
-    # ~~~~~~ General setup and folder creation ~~~~~~ #
-    
-    apt-get update && apt-get install -y wget bzip2
-    
-    # ~~~~~ MINICONDA 3.4.0.5 ~~~~~ #
-    wget https://repo.anaconda.com/miniconda/Miniconda3-4.0.5-Linux-x86_64.sh && \
-    bash Miniconda3-4.0.5-Linux-x86_64.sh -b -p /conda && \
-    rm -f Miniconda3-4.0.5-Linux-x86_64.sh
-    export PATH="/conda/bin:${PATH}"
-       
-    # ~~~~~ parallel-fastq-dump 0.6.3 ~~~~~ #
-    conda install -y -c bioconda parallel-fastq-dump=0.6.3
-    
-%environment
-    export PATH="${PATH}:/conda/bin"
-
-%labels
-    Author Nicolas Descostes
-    Version v0.0.2