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Commit f373b1cf authored by Nicolas Descostes's avatar Nicolas Descostes
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modify with template

parent 2c3e9cc3
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# See https://docs.gitlab.com/ee/ci/yaml/index.html for all available options
stages:
- buildPushImage
image:
.template:
stage: buildPushImage
tags:
- docker7
image:
name: quay.io/singularity/singularity:v3.8.4
entrypoint: [""]
entrypoint: [ "" ]
script:
- singularity build container.sif $RECIPE_PATH/Singularity.$BASENAME-$TAG
- singularity push --docker-username gitlab-ci-token --docker-password $CI_JOB_TOKEN container.sif oras://"$CI_REGISTRY_IMAGE"/$BASENAME:$TAG
#####################
## Quality control
#####################
build-push-singularity-fastqc:
tags:
- docker7
stage: buildPushImage
fastqc-0119:
variables:
BASENAME: fastqc
TAG: 0119
RECIPE_PATH: recipes/quality-control/
script:
- singularity build container.sif $RECIPE_PATH/Singularity.$BASENAME-$TAG
- echo $CI_COMMIT_SHORT_SHA
- singularity push --docker-username gitlab-ci-token --docker-password $CI_JOB_TOKEN container.sif oras://"$CI_REGISTRY_IMAGE"/$BASENAME:$TAG
only:
changes:
- recipes/quality-control/Singularity.fastqc-0119
- recipes/quality-control/fastqc/Singularity.fastqc-0119
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