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Nicolas Descostes
singularityhub-EMBLRome
Commits
f373b1cf
Commit
f373b1cf
authored
2 years ago
by
Nicolas Descostes
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modify with template
parent
2c3e9cc3
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Pipeline
#31941
failed
2 years ago
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.gitlab-ci.yml
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-13
13 additions, 13 deletions
.gitlab-ci.yml
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.gitlab-ci.yml
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View file @
f373b1cf
# See https://docs.gitlab.com/ee/ci/yaml/index.html for all available options
stages
:
-
buildPushImage
image
:
.template
:
stage
:
buildPushImage
tags
:
-
docker7
image
:
name
:
quay.io/singularity/singularity:v3.8.4
entrypoint
:
[
"
"
]
entrypoint
:
[
"
"
]
script
:
-
singularity build container.sif $RECIPE_PATH/Singularity.$BASENAME-$TAG
-
singularity push --docker-username gitlab-ci-token --docker-password $CI_JOB_TOKEN container.sif oras://"$CI_REGISTRY_IMAGE"/$BASENAME:$TAG
#####################
## Quality control
#####################
build-push-singularity-fastqc
:
tags
:
-
docker7
stage
:
buildPushImage
fastqc-0119
:
variables
:
BASENAME
:
fastqc
TAG
:
0119
RECIPE_PATH
:
recipes/quality-control/
script
:
-
singularity build container.sif $RECIPE_PATH/Singularity.$BASENAME-$TAG
-
echo $CI_COMMIT_SHORT_SHA
-
singularity push --docker-username gitlab-ci-token --docker-password $CI_JOB_TOKEN container.sif oras://"$CI_REGISTRY_IMAGE"/$BASENAME:$TAG
only
:
changes
:
-
recipes/quality-control/Singularity.fastqc-0119
-
recipes/quality-control/
fastqc/
Singularity.fastqc-0119
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