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galaxy tool to shift read position in a BAM file. Pretty handy for ATAC-seq. The shell script can also be used directly. Resulting BAM is sorted.

This is an example how snakemake can detected failed slurm jobs.

A script to count the number of sequences in a FASTA file.

Fork of the RCSB mmCIF-dict-suite, with CMake support added

The initial commit is taken from the v2.250 release, available at:

https://sw-tools.rcsb.org/apps/MMCIF-DICT-SUITE/source.html

SNV calling software

SNV calling software

This repository contains recipes to build all the containers I use in my pipelines

Laura Bianchi - Ruprecht lab (CRG)

Gopi Shah - MIF

Nicola Gritti - MIF

Keywords: Luxendo, MuVi SPIM, python, cellpose, apoptosis, segmentation, tracking, support, external, bioimage analysis, zebrafish

Franziska Walterspiel - Deo Group, EMBL Heidelberg;

Christian Tischer, Arif Khan - Bioimage Analysis Service Team, EMBL Heidelberg;

Alina Ritz- Heard Group;

Christian Tischer, Arif Khan - CBA;

Nextflow, python, nuclear cytoplasmic intensity measurements, MoBIE;