Explore projects

Tools for online image analysis of images acquired with Zeiss confocal microscopes.

Alina Ritz- Heard Group;

Christian Tischer, Arif Khan - CBA;

Nextflow, python, nuclear cytoplasmic intensity measurements, MoBIE;

Kenta Imai, Maho Hamasaki - ALMF visitor;

HTM, Screen, Autophagy, CellProfiler

https://grp-bio-it-workshops.embl-community.io/carpentries-lesson-example

Intermediate Network Biology 2019 Day 1

Cuylen Lab

Krim Anlas - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, matlab, TGMM, gastruloids, TGMM, tracking

a suite to handle barcoded fastq files with (or without) Unique Molecule Identifiers (UMIs) and filter read duplicates using these UMIs

Monterotondo Module 1

Jagiellonian University, Collegium Medicum - Omicron Facility 11-13.01.2016

Nick Marschlich - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, pescoids, ultrack, ome-zarr, napari, tracking

Laura Bianchi - Ruprecht lab (CRG)

Gopi Shah - MIF

Nicola Gritti - MIF

Keywords: Luxendo, MuVi SPIM, python, cellpose, apoptosis, segmentation, tracking, support, external, bioimage analysis, zebrafish