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Server to implement image analysis jobs for online use (e.g. in feedback microscopy), including adapters to ilastik and TensorFlow.

Franziska Walterspiel - Deo Group, EMBL Heidelberg;

Christian Tischer, Arif Khan - Bioimage Analysis Service Team, EMBL Heidelberg;

Source code related to the publication "Visualization of loop extrusion by DNA nanoscale tracing in single human cells" by Beckwith, Ødegård-Fougner et.al. DOI: https://doi.org/10.1101/2021.04.12.439407

A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.

Franziska Walterspiel - Deo Group, EMBL Heidelberg;

Christian Tischer, Arif Khan - Bioimage Analysis Service Team, EMBL Heidelberg;

PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining.

A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

Repository to save all code generated and employed in the Mitotic Exit project

GUI and functions for controlling the tracebot and automating microscopes.

A Python client for the high-level DMA API.