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Zimmermann-Kogadeeva Group / PlottingOnGenome
MIT LicenseUpdated -
Arendt Group / SpongeProt
MIT LicenseUpdated -
Bio-IT / Template Pages Group Page
BSD 3-Clause "New" or "Revised" LicenseUpdated -
Bio-IT Workshops / building-websites-with-gitlab
Creative Commons Attribution 4.0 InternationalTraining materials
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OSIM / EPAR
GNU General Public License v3.0 or laterUpdated -
Martin Larralde / pyfastani
MIT LicenseCython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
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Martin Larralde / pytrimal
GNU General Public License v3.0 onlyCython bindings and Python interface to trimAl, a tool for automated alignment trimming.
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Source code related to the publication "Visualization of loop extrusion by DNA nanoscale tracing in single human cells" by Beckwith, Ødegård-Fougner et.al. DOI: https://doi.org/10.1101/2021.04.12.439407
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Bio-IT Workshops / ITPP
Creative Commons Attribution Non Commercial Share Alike 4.0 InternationalIntroduction to Python course materials
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Materials for the Bio-IT "Image Processing with Python" course. Materials have been adapted from those originally forked from Karin Sasaki's GitHub repo.
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Bio-IT Workshops / image-analysis-with-python
MIT LicenseCourse materials for image analysis with the scientific Python stack (numpy/scipy/scikit-image/matplotlib)
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Bio-IT Workshops / embl_hpc
Creative Commons Attribution 4.0 InternationalUpdated -
Bio-IT Workshops / ITPP_data_oriented
Creative Commons Attribution Non Commercial Share Alike 4.0 InternationalUpdated -
Bio-IT Workshops / Building Websites with Jekyll and GitHub or GitLab
Creative Commons Attribution 4.0 InternationalLesson material.
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Bio-IT Workshops / Intermediate Python
Creative Commons Attribution 4.0 InternationalUpdated