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Joana Silva - Haase - Trivedi labs

Nicola Gritti - MIF

Keywords: Thunder, python, segmentation, support, bioimage analysis, micropatterns

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A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)

Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.

PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining.

Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.

Collection of small fiji scripts that are not yet part of larger framework.

A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.

Demo of a Poissonian Cellular-Potts model

A PyTorch implementation of Tree-structured Conditional Random Fields.

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

Simona Gioe, Jona Rada, Hidenobou Miyazawa, Sapna Chhabra - Aulehla Group; Christian Tischer, Arif Khan - Centre for Bioimage Analysis