Explore projects
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Joana Silva - Haase - Trivedi labs
Nicola Gritti - MIF
Keywords: Thunder, python, segmentation, support, bioimage analysis, micropatterns
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Martin Larralde / lightmotif
MIT LicenseA lightweight platform-accelerated library for biological motif scanning using position weight matrices.
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Zimmermann-Kogadeeva Group / GEMsembler
MIT LicenseGEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)
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Martin Larralde / IGUA
GNU General Public License v3.0 onlyIterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.
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Martin Larralde / Pyskani
MIT LicensePyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining.
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Martin Larralde / PytrimAl
GNU General Public License v3.0 onlyCython bindings and Python interface to trimAl, a tool for automated alignment trimming.
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Collection of small fiji scripts that are not yet part of larger framework.
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Martin Larralde / gb-io.py
MIT LicenseA Python interface to gb-io, a fast GenBank parser and serializer written in Rust.
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Roman Belousov / microcaliber
Creative Commons Attribution 4.0 InternationalUpdated -
Marco Raffaele Cosenza / magic_automation
MIT LicenseUpdated -
Roman Belousov / dycpm
Creative Commons Attribution 4.0 InternationalDemo of a Poissonian Cellular-Potts model
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Martin Larralde / Torch TreeCRF
MIT LicenseA PyTorch implementation of Tree-structured Conditional Random Fields.
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Martin Larralde / PyFastANI
MIT LicenseCython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
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Marco Raffaele Cosenza / magic_tools
Mozilla Public License 2.0Updated -
CBA / tail-analysis
MIT LicenseSimona Gioe, Jona Rada, Hidenobou Miyazawa, Sapna Chhabra - Aulehla Group; Christian Tischer, Arif Khan - Centre for Bioimage Analysis
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