Explore projects
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Laura Bianchi - Ruprecht lab (CRG)
Gopi Shah - MIF
Nicola Gritti - MIF
Keywords: Luxendo, MuVi SPIM, python, cellpose, apoptosis, segmentation, tracking, support, external, bioimage analysis, zebrafish
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Arendt Group / prospr-dash
MIT LicenseUpdated -
Martin Larralde / NAFcodec
MIT LicenseRust coder/decoder for Nucleotide Archive Format (NAF) files.
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Zimmermann-Kogadeeva Group / PlottingOnGenome
MIT LicenseUpdated -
Martin Larralde / PytrimAl
GNU General Public License v3.0 onlyCython bindings and Python interface to trimAl, a tool for automated alignment trimming.
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Martin Larralde / PySWRD
GNU General Public License v3.0 onlyCython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a method for fast database search.
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Martin Larralde / mini3di
GNU General Public License v3.0 onlyA NumPy port of the foldseek code for encoding protein structures to 3di.
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Martin Larralde / peptides.py
GNU General Public License v3.0 onlyPhysicochemical properties and indices for amino-acid sequences (ported from R).
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Bartosz Jan Bartmanski / PoolingScheme
MIT LicenseUpdated -
Martin Schorb / py-EM
GNU General Public License v3.0 onlyUpdated -
Roman Belousov / dycpm
Creative Commons Attribution 4.0 InternationalDemo of a Poissonian Cellular-Potts model
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Niko Papadopoulos / platython
MIT LicenseUpdated -
Development of Automated Protocols on Zeiss microscopes controlled by ZenBlue
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a MATLAB application (GUI) to support MINFLUX data visualization
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Martin Larralde / PyFastANI
MIT LicenseCython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
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Martin Larralde / Torch TreeCRF
MIT LicenseA PyTorch implementation of Tree-structured Conditional Random Fields.
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