Explore projects

A scalable and reproducible Snakemake workflow for preprocessing SUM-seq data

Franziska Walterspiel - Deo Group, EMBL Heidelberg;

Christian Tischer, Arif Khan - Bioimage Analysis Service Team, EMBL Heidelberg;

Notes and SLURM templates for using AlphaFold and related tools on the EMBL HD cluser

Alina Ritz- Heard Group;

Christian Tischer, Arif Khan - CBA;

Nextflow, python, nuclear cytoplasmic intensity measurements, MoBIE;

Krim Anlas - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, matlab, TGMM, gastruloids, TGMM, tracking

Nick Marschlich - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, pescoids, ultrack, ome-zarr, napari, tracking