Explore projects

Alina Ritz- Heard Group;

Christian Tischer, Arif Khan - CBA;

Nextflow, python, nuclear cytoplasmic intensity measurements, MoBIE;

Notes and SLURM templates for using AlphaFold and related tools on the EMBL HD cluser

Krim Anlas - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, matlab, TGMM, gastruloids, TGMM, tracking

Nick Marschlich - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, pescoids, ultrack, ome-zarr, napari, tracking

Python interface to Prodigal, an ORF finder for genomes, progenomes and metagenomes.

This repository contains recipes to build all the containers I use in my pipelines