Explore projects

This repository includes the exact commands/instructions in order to set up and run the integrative modelling of ScNPC adapted from Allegretti et al. (2020).

Laura Bianchi - Ruprecht lab (CRG)

Gopi Shah - MIF

Nicola Gritti - MIF

Keywords: Luxendo, MuVi SPIM, python, cellpose, apoptosis, segmentation, tracking, support, external, bioimage analysis, zebrafish

EMBL Python User Group

EMBL Python User Group

Cython bindings and Python interface to HMMER3.

Python interface to Prodigal, an ORF finder for genomes, progenomes and metagenomes.

a suite to handle barcoded fastq files with (or without) Unique Molecule Identifiers (UMIs) and filter read duplicates using these UMIs

galaxy tool to shift read position in a BAM file. Pretty handy for ATAC-seq. The shell script can also be used directly. Resulting BAM is sorted.

EMBL Python User Group fork

Metagenomics and metatranscriptomics integration

Cyro-ET analysis of ribo-decorated mitos in glucose-depleted S. pombe cells

Deployment configuration for the Bretzel App project.