Explore projects
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Krim Anlas - Trivedi lab;
Nicola Gritti - MIF
Keywords: bioimage analysis, support, MIF, python, matlab, TGMM, gastruloids, TGMM, tracking
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Ivo Fierro / machine_learning_scripts
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Martin Larralde / peptides.py
GNU General Public License v3.0 onlyPhysicochemical properties and indices for amino-acid sequences (ported from R).
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Nick Marschlich - Trivedi lab;
Nicola Gritti - MIF
Keywords: bioimage analysis, support, MIF, python, pescoids, ultrack, ome-zarr, napari, tracking
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Zimmermann-Kogadeeva Group / GEMsembler
MIT LicenseGEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)
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Martin Larralde / Pyrodigal
GNU General Public License v3.0 onlyPython interface to Prodigal, an ORF finder for genomes, progenomes and metagenomes.
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Martin Larralde / lightmotif
MIT LicenseA lightweight platform-accelerated library for biological motif scanning using position weight matrices.
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A Python client for the high-level DMA API.
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Martin Larralde / gb-io.py
MIT LicenseA Python interface to gb-io, a fast GenBank parser and serializer written in Rust.
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Martin Larralde / PytrimAl
GNU General Public License v3.0 onlyCython bindings and Python interface to trimAl, a tool for automated alignment trimming.
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Alex Kelleher / oc.pyos
GNU General Public License v2.0 or laterUpdated