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GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)

EMBL Python User Group

Python interface to Prodigal, an ORF finder for genomes, progenomes and metagenomes.

Centre for Bioimage Analysis

Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a method for fast database search.

Cython bindings and Python interface to HMMER3.

SVLT = Serving Vision to Living Things. A service for on-demand computer vision, targeted at image feedback in microscopy and other life sciences applications.

Demo of a Poissonian Cellular-Potts model

Development of Automated Protocols on Zeiss microscopes controlled by ZenBlue

Cuylen Lab

Alina Ritz- Heard Group;

Christian Tischer, Arif Khan - CBA;

Nextflow, python, nuclear cytoplasmic intensity measurements, MoBIE;

A NumPy port of the foldseek code for encoding protein structures to 3di.

Krim Anlas - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, matlab, TGMM, gastruloids, TGMM, tracking