Explore projects

Monterotondo Day 2

Microscopy Pipeline Constructor (MyPiC)

Snakemake biological workflow management tutorial

Tools to process imaging and FCS data for FCS calibrated imaging

Materials for the Software Carpentry workshop taking place at EMBL, Heidelberg, in September 2016

Snakemake biological workflow management tutorial

Dynamic genome browsing

editing the gencode v23 tRNA annotation

This repository contains analysis protocols for p62-iCLIP analysis.

helping scripts

Collection of scripts to help with proteomics data analysis

scripts for fitting to em maps

Inception-BN neural network model trained over protein crystal images

Model gives about 96% accuracy of classification image into three classes:

crystal

precipitate

no crystal

ZEN Black Visual Basic code and ImageJ Jython scripts to enable the user to manually select the point where the next image is taken.

Image Analysis for microscopy of high precision cut lung slices (hPCLS)

Example client for the SASBDB REST API