Explore projects

R package to reconstruct stem cell lineage priming from single cell data

An intro to R using the tidyverse.

Data handling and graphics in R

scripts for fitting to em maps

A metagenomic SNP calling pipeline

SNV calling software

Scripts associated with the paper "Extensive impact of non-antibiotic drugs on human gut bacteria"

Materials for a course on statistical methods in bioinformatics

Clean repository for the working version of SIAMCAT.

Miscellaneous public Scripts

Source code for "Genome-wide quantification of differential transcription factor activity: diffTF"

alpha-version of the reannotation pipeline (pdProbeRemap)

Source code to generate the mitotic cell atlas