R package to reconstruct stem cell lineage priming from single cell data
An intro to R using the tidyverse.
Data handling and graphics in R
scripts for fitting to em maps
A metagenomic SNP calling pipeline
SNV calling software
Scripts associated with the paper "Extensive impact of non-antibiotic drugs on human gut bacteria"
Materials for a course on statistical methods in bioinformatics
Clean repository for the working version of SIAMCAT.
Miscellaneous public Scripts
Source code for
"Genome-wide quantification of differential transcription factor activity: diffTF"
alpha-version of the reannotation pipeline (pdProbeRemap)
Source code to generate the mitotic cell atlas