Source code for "Genome-wide quantification of differential transcription factor activity: diffTF"

Spherical harmonic (A_lm) representations of scattering amplitude, using GPU computation

Course materials for image analysis with the scientific Python stack (numpy/scipy/scikit-image/matplotlib)

RNAseq tutorial with basic linux introduction

Metagenomics and metatranscriptomics integration

A repository for materials associated with teaching image analysis. See https://grp-bio-it.embl-community.io/image-analysis-training-resources/ for rendered pages.

Clean repository for the working version of SIAMCAT.

indeXplorer is a software suite that integrates flow cytometry and scRNAseq data analysis in a single graphical user interface.

Tools to design primers optimised for mutliplex PCRs and RT reactions.

A script to count the number of sequences in a FASTA file.

Analyses scripts and Rmarkdown vignettes for graper manuscript.

R package for group-adaptive penalized regression