Explore projects

Python interface to Prodigal, an ORF finder for genomes, progenomes and metagenomes.

A NumPy port of the foldseek code for encoding protein structures to 3di.

Rendered at: https://grp-bio-it.embl-community.io/template-jupyter-book

A Python client for the high-level DMA API.

Interactive visualization of images and image-derived data.

Daniel Heid - Zaugg Group;

Christian Tischer - CBA;

Wound healing analysis, High throughput microscopy

Daniel Heid - Zaugg Group;

Christian Tischer - CBA;

Wound healing analysis, High throughput microscopy

Kerim Anlas - Trivedi lab;

Kristina Stapornwongkul - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, python, HCR, gastruloids, Opera PE, MIF, support, nextflow

This project aims to offer a platform for sharing ideas, resources, tools & techniques, interesting publications, interviews and stories from all our community members. https://grp-bio-it.embl-community.io/blog/

a suite to handle barcoded fastq files with (or without) Unique Molecule Identifiers (UMIs) and filter read duplicates using these UMIs