Explore projects

Materials relating to the EMBL Bio-IT course on Scientific Data Management.

R project for enterotyping & more

Liposome microarray (LiMA) analysis suite

Synchronises the content of a directory on the server with a galaxy library's folder. The server dir sub-structure is preserved and all files linked using symbolic links. The script can be started in daemon mode or placed under cron monitoring.

Tools to process imaging and FCS data for FCS calibrated imaging

Analysis code for a study on oral-fecal microbial transmission.

UI for the Lab DataWareHouse Tool

A fork of the Bio-IT repository for materials associated with teaching image analysis. See https://stamper.embl-community.io/image-analysis-training-resources/ for rendered pages.

EMBL Bio-IT Community Documentation. https://grp-bio-it.embl-community.io/docs

package for testing the effect of several variables in a multivariate set

A practical example about how to run a MongoDB service on demand in the HPC cluster.

Materials for the ALMF/Bio-IT Image Analysis with Python series, running Spring/Summer 2018

Metagenomics and metatranscriptomics integration

Command line tool to download raw reads from ENA

ZEN Black Visual Basic code and ImageJ Jython scripts to enable the user to manually select the point where the next image is taken.