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Small bash script to sort Luxendo's SPIM data in one single folder

Materials for the Software Carpentry workshop taking place at EMBL, Heidelberg, in September 2016

Materials for the Software Carpentry workshop taking place at EMBL, Heidelberg, in September 2016

Materials for Python Scripting section of Nov 2015 Software Carpentry Course.

Snakemake biological workflow management tutorial

Snakemake biological workflow management tutorial

Snakemake biological workflow management tutorial

Snakemake biological workflow management tutorial

This is an example how snakemake can detected failed slurm jobs.

Nextflow workflow to convert pyramidal images in PerkinElmer qptiff format to ome-tiff.

Preparation material for the training

Preparation material for the training

Preparation material for the training

test integration

A practical example about how to run a MongoDB service on demand in the HPC cluster.

A practical example about how to run a MongoDB service on demand in the HPC cluster.

A practical example about how to run a MongoDB service on demand in the HPC cluster.

Singularity RStudio examples