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Hentze Group / RBPbase Shiny Server
MIT LicenseRBPbase - data base of high throughput RNA-binding protein detection studies
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This source code extracts distributions of nups inside core and non-core regions; and was developed to quantify different nups for the manuscript below: Otsuka "A quantitative map of nuclear pore assembly reveals two distinct mechanisms"
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Kosinski group / pyxlinks
GNU General Public License v3.0 or laterA Python package for dealing with cross-linking/MS data
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Martin Larralde / PytrimAl
GNU General Public License v3.0 onlyCython bindings and Python interface to trimAl, a tool for automated alignment trimming.
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Materials for the Bio-IT "Image Processing with Python" course. Materials have been adapted from those originally forked from Karin Sasaki's GitHub repo.
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Materials for an intermediate Python course, to be run at EMBL as part of the Bio-IT project.
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Martin Larralde / PySWRD
GNU General Public License v3.0 onlyCython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a method for fast database search.
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Martin Larralde / Pyskani
MIT LicensePyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining.
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Martin Larralde / Pyrodigal
GNU General Public License v3.0 onlyPython interface to Prodigal, an ORF finder for genomes, progenomes and metagenomes.
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