GitLab

Python interface to Prodigal, an ORF finder for genomes, progenomes and metagenomes.

https://grp-bio-it-workshops.embl-community.io/carpentries-lesson-example

Cython bindings and Python interface to HMMER3.

Course materials for the EMBL-EBI Metagenomics Bioinformatics course

https://tsi-ccdoc.readthedocs.io/en/master/ResOps/2019/gitlab/02_create-sample-project.html

In this project, we investigated drug impact on gut bacteria by analyzing a large untergeted metabolomics data set and integrating drug-protein interaction networks from STITCH.