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This is a project space for spatial transcriptomic validation of DPLS results
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Example image of cells for testing segmentation pipeline
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Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
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EMBL Python User Group
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Source code related to the publication "Visualization of loop extrusion by DNA nanoscale tracing in single human cells" by Beckwith, Ødegård-Fougner et.al. DOI:
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Introduction to using Cytoscape and basics of Network Biology
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Read-only mirror of: https://github.com/tobyhodges/regex-introduction
Website at: https://grp-bio-it-workshops.embl-community.io/regex-introduction
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This repository includes the exact commands/instructions in order to set up and run the integrative modelling of ScNPC adapted from Allegretti et al. (2020).
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