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Extension of AutoMicTools project for testing and running for feedback microscopy experiments with FluoView 3000 confocal microscope

Franziska Walterspiel - Deo Group, EMBL Heidelberg;

Christian Tischer, Arif Khan - Bioimage Analysis Service Team, EMBL Heidelberg;

Collaborator, Collaborator - Group;

Keyword, Keyword

Cuylen Lab

Kenta Imai, Maho Hamasaki - ALMF visitor;

HTM, Screen, Autophagy, CellProfiler

Alina Ritz- Heard Group;

Christian Tischer, Arif Khan - CBA;

Nextflow, python, nuclear cytoplasmic intensity measurements, MoBIE;

Krim Anlas - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, matlab, TGMM, gastruloids, TGMM, tracking

Nick Marschlich - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, pescoids, ultrack, ome-zarr, napari, tracking

Laura Bianchi - Ruprecht lab (CRG)

Gopi Shah - MIF

Nicola Gritti - MIF

Keywords: Luxendo, MuVi SPIM, python, cellpose, apoptosis, segmentation, tracking, support, external, bioimage analysis, zebrafish

a suite to handle barcoded fastq files with (or without) Unique Molecule Identifiers (UMIs) and filter read duplicates using these UMIs

https://grp-bio-it-workshops.embl-community.io/carpentries-lesson-example