Explore projects

Server to implement image analysis jobs for online use (e.g. in feedback microscopy), including adapters to ilastik and TensorFlow.

PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining.

A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

Repository to save all code generated and employed in the Mitotic Exit project

GUI and functions for controlling the tracebot and automating microscopes.

A Python client for the high-level DMA API.

Collaborator, Collaborator - Group;

Keyword, Keyword

GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)

EMBL Python User Group

Python interface to Prodigal, an ORF finder for genomes, progenomes and metagenomes.

Centre for Bioimage Analysis

A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.