Explore projects

Lib and scripts for running Modeller

scripts for dealing with PDB files

A Python package for dealing with cross-linking/MS data

Bio-IT Linux Commandline courses

A INPHARMA data

a suite to handle barcoded fastq files with (or without) Unique Molecule Identifiers (UMIs) and filter read duplicates using these UMIs

Jagiellonian University, Collegium Medicum - Omicron Facility 11-13.01.2016

A metagenomic SNV calling pipeline

Monterotondo Module 1

Monterotondo Day 2

Old Python Club project that I ran in my previous life

Materials for the Software Carpentry workshop taking place at EMBL, Heidelberg, in September 2016

helping scripts

galaxy tool to shift read position in a BAM file. Pretty handy for ATAC-seq. The shell script can also be used directly. Resulting BAM is sorted.

scripts for fitting to em maps

A metagenomic SNP calling pipeline

Fork of the RCSB mmCIF-dict-suite, with CMake support added

The initial commit is taken from the v2.250 release, available at:

https://sw-tools.rcsb.org/apps/MMCIF-DICT-SUITE/source.html

Fork of the RCSB mmCIF-dict-suite, with CMake support added

The initial commit is taken from the v2.250 release, available at:

https://sw-tools.rcsb.org/apps/MMCIF-DICT-SUITE/source.html