Explore projects
-
Updated
-
Updated
-
Server to implement image analysis jobs for online use (e.g. in feedback microscopy), including adapters to ilastik and TensorFlow.
Updated -
Franziska Walterspiel - Deo Group, EMBL Heidelberg;
Christian Tischer, Arif Khan - Bioimage Analysis Service Team, EMBL Heidelberg;
Updated -
Source code related to the publication "Visualization of loop extrusion by DNA nanoscale tracing in single human cells" by Beckwith, Ødegård-Fougner et.al. DOI: https://doi.org/10.1101/2021.04.12.439407
Updated -
A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.
Updated -
Updated
-
Updated
-
Franziska Walterspiel - Deo Group, EMBL Heidelberg;
Christian Tischer, Arif Khan - Bioimage Analysis Service Team, EMBL Heidelberg;
Updated -
Updated
-
PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining.
Updated -
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
Updated -
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
Updated -
Repository to save all code generated and employed in the Mitotic Exit project
Updated -
GUI and functions for controlling the tracebot and automating microscopes.
Updated -
A Python client for the high-level DMA API.
Updated