Explore projects

Laura Bianchi - Ruprecht lab (CRG)

Gopi Shah - MIF

Nicola Gritti - MIF

Keywords: Luxendo, MuVi SPIM, python, cellpose, apoptosis, segmentation, tracking, support, external, bioimage analysis, zebrafish

Fork of the vitessceR repo with fixes for displaying OME-TIFF images.

A flexible and compatible Visual Framework. Designed for branding and the life sciences.

A template repository that provides a minimal terraform and ansible recipe to create a virtual machine in de.NBI's EMBL cloud.

Overlap between tads and inversions.

A scalable and reproducible Snakemake workflow for preprocessing SUM-seq data

Small bash script to sort Luxendo's SPIM data in one single folder

Materials for the Software Carpentry workshop taking place at EMBL, Heidelberg, in September 2016

This is an example how snakemake can detected failed slurm jobs.

Nextflow workflow to convert pyramidal images in PerkinElmer qptiff format to ome-tiff.

A practical example about how to run a MongoDB service on demand in the HPC cluster.

A practical example about how to run a MongoDB service on demand in the HPC cluster.

A practical example about how to run a MongoDB service on demand in the HPC cluster.