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This repository includes the exact commands/instructions in order to set up and run the integrative modelling of ScNPC adapted from Allegretti et al. (2020).
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Laura Bianchi - Ruprecht lab (CRG)
Gopi Shah - MIF
Nicola Gritti - MIF
Keywords: Luxendo, MuVi SPIM, python, cellpose, apoptosis, segmentation, tracking, support, external, bioimage analysis, zebrafish
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Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.
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Python interface to Prodigal, an ORF finder for genomes, progenomes and metagenomes.
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A NumPy port of the foldseek code for encoding protein structures to 3di.
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