Explore projects

Centre for Bioimage Analysis

Cython bindings and Python interface to HMMER3.

An R API to the agrotoxin database using R6 objects.

This repository includes the exact commands/instructions in order to set up and run the integrative modelling of ScNPC adapted from Allegretti et al. (2020).

Laura Bianchi - Ruprecht lab (CRG)

Gopi Shah - MIF

Nicola Gritti - MIF

Keywords: Luxendo, MuVi SPIM, python, cellpose, apoptosis, segmentation, tracking, support, external, bioimage analysis, zebrafish

EMBL Python User Group

EMBL Python User Group

Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.

Python interface to Prodigal, an ORF finder for genomes, progenomes and metagenomes.

A NumPy port of the foldseek code for encoding protein structures to 3di.