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Nikolaos Papadopoulos authoredadded countland inspection of single cell; looked at evidence for HGT; included Fabi's exploration of various protein characteristics in relation to annotation status
Nikolaos Papadopoulos authoredadded countland inspection of single cell; looked at evidence for HGT; included Fabi's exploration of various protein characteristics in relation to annotation status
predict_structure.sh 548 B
#!/bin/bash -ex
#SBATCH -J test_colab
#SBATCH -t 30:00
#SBATCH -o /g/arendt/npapadop/cluster/alphafold_test.out
#SBATCH -e /g/arendt/npapadop/cluster/alphafold_test.err
#SBATCH -p gpu
#SBATCH -C gpu=A100
#SBATCH --gres=gpu:1
#SBATCH -N 1
#SBATCH --ntasks=32
#SBATCH --mem=512000
module load Anaconda3
module load GCC
module load bzip2
module load CUDA
source ~/.bash_profile
conda activate /g/arendt/npapadop/repos/condas/colabfold
BASE="/scratch/npapadop/"
colabfold_batch "$BASE"/msas/test/ "$BASE"/test_res/ --stop-at-score 85
module unload