added countland inspection of single cell; looked at evidence for HGT;...
added countland inspection of single cell; looked at evidence for HGT; included Fabi's exploration of various protein characteristics in relation to annotation status
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- analysis/countland.ipynb 962 additions, 0 deletionsanalysis/countland.ipynb
- analysis/suppl-annotation_categories.ipynb 270 additions, 695 deletionsanalysis/suppl-annotation_categories.ipynb
- analysis/suppl-horizontal_gene_transfer.ipynb 181 additions, 0 deletionsanalysis/suppl-horizontal_gene_transfer.ipynb
- scripts/align.sh 0 additions, 0 deletionsscripts/align.sh
- scripts/batch_predict.sh 0 additions, 0 deletionsscripts/batch_predict.sh
- scripts/create_index.sh 0 additions, 0 deletionsscripts/create_index.sh
- scripts/databases.sh 0 additions, 0 deletionsscripts/databases.sh
- scripts/fs_afdb.sh 0 additions, 0 deletionsscripts/fs_afdb.sh
- scripts/fs_pdb.sh 0 additions, 0 deletionsscripts/fs_pdb.sh
- scripts/fs_query.sh 0 additions, 0 deletionsscripts/fs_query.sh
- scripts/fs_search_afdb.sh 0 additions, 0 deletionsscripts/fs_search_afdb.sh
- scripts/fs_search_pdb.sh 0 additions, 0 deletionsscripts/fs_search_pdb.sh
- scripts/fs_search_swissprot.sh 0 additions, 0 deletionsscripts/fs_search_swissprot.sh
- scripts/fs_sp.sh 0 additions, 0 deletionsscripts/fs_sp.sh
- scripts/gpu_test.sh 0 additions, 0 deletionsscripts/gpu_test.sh
- scripts/milot.sh 0 additions, 0 deletionsscripts/milot.sh
- scripts/mkdb.sh 0 additions, 0 deletionsscripts/mkdb.sh
- scripts/predict_protein.sh 0 additions, 0 deletionsscripts/predict_protein.sh
- scripts/predict_structure.sh 0 additions, 0 deletionsscripts/predict_structure.sh
- scripts/spongilla_create_index.sh 0 additions, 0 deletionsscripts/spongilla_create_index.sh
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