added countland inspection of single cell; looked at evidence for HGT;...

added countland inspection of single cell; looked at evidence for HGT; included Fabi's exploration of various protein characteristics in relation to annotation status

added countland inspection of single cell; looked at evidence for HGT;...
added countland inspection of single cell; looked at evidence for HGT; included Fabi's exploration of various protein characteristics in relation to annotation status
0edb1cce · Nikolaos Papadopoulos · 8bc04a68 · 0edb1cce · 0edb1cce · 0edb1cce
Commit 0edb1cce authored 2 years ago by Nikolaos Papadopoulos
--- a/analysis/countland.ipynb
+++ b/analysis/countland.ipynb
--- a/analysis/suppl-annotation_categories.ipynb
+++ b/analysis/suppl-annotation_categories.ipynb
--- a/analysis/suppl-horizontal_gene_transfer.ipynb
+++ b/analysis/suppl-horizontal_gene_transfer.ipynb
--- a/align.sh
+++ b/align.sh
--- a/batch_predict.sh
+++ b/batch_predict.sh
--- a/create_index.sh
+++ b/create_index.sh
--- a/databases.sh
+++ b/databases.sh
--- a/fs_afdb.sh
+++ b/fs_afdb.sh
--- a/fs_pdb.sh
+++ b/fs_pdb.sh
--- a/fs_query.sh
+++ b/fs_query.sh
--- a/fs_search_afdb.sh
+++ b/fs_search_afdb.sh
--- a/fs_search_pdb.sh
+++ b/fs_search_pdb.sh
--- a/fs_search_swissprot.sh
+++ b/fs_search_swissprot.sh
--- a/fs_sp.sh
+++ b/fs_sp.sh
--- a/gpu_test.sh
+++ b/gpu_test.sh
--- a/milot.sh
+++ b/milot.sh
--- a/mkdb.sh
+++ b/mkdb.sh
--- a/predict_protein.sh
+++ b/predict_protein.sh
--- a/predict_structure.sh
+++ b/predict_structure.sh
--- a/spongilla_create_index.sh
+++ b/spongilla_create_index.sh