Supp_miRNA_Annotation_Table.xlsx - miRNA_annotated.csv

miRNA name,Mature sequence,Star sequence,pre-miRNA sequence,Genomic coordinates,Node of Origin (Family),Lineage Order,Node of Origin (Locus),MirDeep2 Score,Mature read Counts,Star read counts
Pdu-Let-7_5p,UGAGGUAGUAGGUUGUAUAGUA,cuguacaaccuucuagcuuucc,ugagguaguagguuguauaguaagagaacuacaccuuuuucuggcggacuguacaaccuucuagcuuucc,scaffold_4:25097122..25097192:-,Bilateria,1,Bilateria,1976.70,3458,376
Pdu-Mir-1_3p_+_,UGGAAUGUAAAGAAGUAUGUAG,acauacuucuucauauaccaua,acauacuucuucauauaccauaucuuuacugauguauggaauguaaagaaguauguag,scaffold_1:162427564..162427622:+,Bilateria,1,P. dumerilii,2539640.40,4970404,10982
Pdu-Mir-1_3p-5p_-_,UGGUAUAUGAAGAAGUAUGUGA,acauacuucuuuacauuccaua,acauacuucuuuacauuccauacaucaguaaagauaugguauaugaagaaguauguga,scaffold_1:162427562..162427620:-,Bilateria,1,P. dumerilii,10.40,19,1
Pdu-Mir-10-P1_5p,UACCCUGUAGAUCCGAAUUUGU,aaauucgagucugcggaguguug,uacccuguagauccgaauuuguguauaaaaugacaacaaauucgagucugcggaguguug,scaffold_27:3434438..3434498:+,Bilateria,1,Bilateria,148547.30,288965,2396
Pdu-Mir-10-P2_5p,AACCCGUACAACCGAACUUGUG,caagcucgcucuuacgggccug,aacccguacaaccgaacuugugucguacgaauaaaucacaagcucgcucuuacgggccug,scaffold_4:25098345..25098405:-,Bilateria,1,Bilateria,4.20,61860,0
Pdu-Mir-10-P3_5p-3p,UCCCUGAGACCCUAACUUGUGA,acagguugaggucuugggacua,ucccugagacccuaacuugugaagaaaaacgucacagguugaggucuugggacua,scaffold_4:25095716..25095771:-,Bilateria,1,Bilateria,14069.20,17124,10463
Pdu-Mir-10-P4-1_3p-5p_+_,AGAAGCUCGGUUCUACAGGUA,acccuguagacccggguuugugu,acccuguagacccggguuuguguuguucagagcaaaucacagaagcucgguucuacaggua,scaffold_27:3633349..3633410:-,Bilateria,1,Protostomia,1988.60,2643,1249
Pdu-Mir-10-P4-1_5p_-_,UACCUGUAGAACCGAGCUUCUG,caaacccgggucuacaggguau,uaccuguagaaccgagcuucugugauuugcucugaacaacacaaacccgggucuacaggguau,scaffold_27:3633349..3633412:+,Bilateria,1,P. dumerilii,131939.60,251577,7201
Pdu-Mir-10-P4-2_5p,AACCCUGUGGAUACGGGCUUGU,aagcucguuuuuacaagguguc,aacccuguggauacgggcuugugucgauuacaucaacaagcucguuuuuacaagguguc,scaffold_27:3503211..3503270:-,Bilateria,1,P. dumerilii,5675.20,10728,396
Pdu-Mir-10-P5_5p,UUACCCUGUAGAACCGAGCGAGUA,ccacucaguucacagggucauu,uuacccuguagaaccgagcgaguauguauucauuaguaccacucaguucacagggucauu,scaffold_27:2892358..2892418:+,Bilateria,1,Lophotrochozoa,1741.90,3405,7
Pdu-Mir-10-P6_5p,UUUACCCUGUGAAUAGAGAGUG,gucucauuucuugggguaagca,uuuacccugugaauagagagugggguauuucauucccagucucauuucuugggguaagca,scaffold_27:2135863..2135923:+,Bilateria,1,Lophotrochozoa,1.40,1812,0
Pdu-Mir-10-P7_5p,CACCCUGUAGAACCGAGCUUGU,caggcugguuacaccgggucaa,cacccuguagaaccgagcuugugcugaauucaaaacacaggcugguuacaccgggucaa,scaffold_27:3180449..3180508:+,Bilateria,1,Annelida,958.90,1871,2
Pdu-Mir-124_3p-5p,UAAGGCACGCGGUGAAUGCCA,aguguucacuguguacgccuuggu,aguguucacuguguacgccuuggugugugguaacuauuaaggcacgcggugaaugcca,scaffold_1:63283530..63283588:-,Bilateria,1,Bilateria,40796.70,53749,26263
Pdu-Mir-133_3p,UUGGUCCCCUUCAACCAGCUGU,agcugguugaaauagggccaaau,agcugguugaaauagggccaaauugucugauuuucugucauuugguccccuucaaccagcugu,scaffold_1:162444773..162444836:+,Bilateria,1,Bilateria,146975.30,277403,10846
Pdu-Mir-137,missing but putative gene locus found,,,,Bilateria,1,,,,
Pdu-Mir-153_5p-3p,CGAGCUUUUGUGAUUUGCAAUU,uugcauagucacaaaagugauc,cgagcuuuugugauuugcaauuguauuguggacaaauugcauagucacaaaagugauc,scaffold_1:61020209..61020267:-,Bilateria,1,Bilateria,16810.40,23480,9491
Pdu-Mir-184_3p,UGGACGGAGAACUGAUAAGGGC,ccuucucacuuguucguccggu,ccuucucacuuguucguccggucuuauauuugaguacuggacggagaacugauaagggc,scaffold_1:167014350..167014409:+,Bilateria,1,Bilateria,1391420.90,2715241,13963
Pdu-Mir-190_5p,AGAUAUGUUUGAUAUAUUUGGUGG,accauguaucaaacaugucacg,agauauguuugauauauuuggugguuuuuauaaaggaucuaccauguaucaaacaugucacg,scaffold_1:167624155..167624217:+,Bilateria,1,Bilateria,5.20,52292,0
Mir-193-P1,Not found,,,,Bilateria,1,,,,
Pdu-Mir-193-P2_3p,CAAUGCCCUAUGAAAUCCUAAA,ugggauuucugggggcauccugug,ugggauuucugggggcauccugugauauugaacugacaaugcccuaugaaauccuaaa,scaffold_186:387560..387618:-,Bilateria,1,Bilateria,38159.70,71119,3723
Pdu-Mir-2001_5p-3p,missing but found in previous prediction/genome assembly,,,,Bilateria,1,,,,
Pdu-Mir-210-1_3p-5p,CUUGUGCGUGUGACAGUGACAAU,ccgucacuggcuccgcgcaaaga,ccgucacuggcuccgcgcaaagaguagaaugaugccccucuugugcgugugacagugacaau,scaffold_10:1472007..1472069:-,Bilateria,1,P. dumerilii,5969.80,9638,2063
Pdu-Mir-210-2_3p,UUGUGCGUGGGACAGCGGCCCGC,caccguugcuucaugcccagcg,caccguugcuucaugcccagcguuaaauucaagucguugugcgugggacagcggcccgc,scaffold_10:1593967..1594026:-,Bilateria,1,P. dumerilii,4282.90,8355,37
Pdu-Mir-210-3_3p,UUGUGCGUGGAACAGCGACCAU,gucacuggccuuggcacaagca,gucacuggccuuggcacaagcacuuacguuuuaauguguugugcguggaacagcgaccau,scaffold_10:1599739..1599799:-,Bilateria,1,P. dumerilii,3249.00,5869,505
Pdu-Mir-216-P1_5p,UAAUCUCAGCUGGUAAAAGUGAG,ccaguuacuagcugagguuaca,uaaucucagcugguaaaagugagugcaugacuucuccaguuacuagcugagguuaca,scaffold_7:46914986..46915043:-,Bilateria,1,Bilateria,10011.30,19576,53
Pdu-Mir-216-P2_5p,AAAUAUCAGCUGGUAAUUCUGAG,caggauucgagcugauauuggg,aaauaucagcugguaauucugagugguuugaucuaguccucaggauucgagcugauauuggg,scaffold_7:46915860..46915922:-,Bilateria,1,Bilateria,81982.40,157818,2972
Pdu-Mir-219-1_5p,UGAUUGUCCAAACGCAUUUCUUG ,agaacuguuuuggacaucagu,ugauuguccaaacgcauuucuuguuguagcugaccaagaacuguuuuuggacaucagu,scaffold_6:22743322..22743380:+,Bilateria,1,P. dumerilii,586.90,632,512
Pdu-Mir-219-2_5p,UGAUUGUCCAAACGCAUUUCUUG ,agaacuguuuuggacaucagu,ugauuguccaaacgcauuucuuguuguagcugaccaagaacuguuuuuggacaucagu,scaffold_8:20782311..20782369:-,Bilateria,1,P. dumerilii,586.90,632,512
Pdu-Mir-22-P1_3p,AGCUGCCUGGUGAAGAGCUGUC,cggccuuucuccaggcaggacuuu,cggccuuucuccaggcaggacuuuguguuucugacuaaagcugccuggugaagagcuguc,scaffold_2:75490842..75490902:-,Bilateria,1,Bilateria,146146.30,275214,11437
Pdu-Mir-22-P2_3p-5p,GAGCUGCCAAGUGAAGGGCUGU,aguuccuucuccuggcugcuguccc,aguuccuucuccuggcugcugucccuaugcuaugggcgggagcugccaagugaagggcugu,scaffold_2:75489903..75489964:-,Bilateria,1,Bilateria,1.80,18261,28666
Pdu-Mir-242-1a_5p,UUGCGUAGGCGUUGUGCACAGA,uguguauuuugccuacgcaaauu,uugcguaggcguugugcacagauuugaucacgcgaguggucuguguauuuugccuacgcaaauu,scaffold_7:29826410..29826474:+,Bilateria,1,P. dumerilii,349516.30,685488,64
Pdu-Mir-242-2b_5p,UUGCGUAGGCGUUGUGCACAGA,uguguauuuuaccuacgcaaau,uugcguaggcguugugcacagauuugaucaugaagguggucuguguauuuuaccuacgcaaau,scaffold_7:29826776..29826839:+,Bilateria,1,P. dumerilii,4.50,685488,0
Pdu-Mir-242-3c_5p,UUGCGUAGGCGUUGUGCACAGA,uguguauuuugccuacgcaauu,uugcguaggcguugugcacagauuugaccaacuaaguggucuguguauuuugccuacgcaauu,scaffold_7:29827091..29827154:+,Bilateria,1,P. dumerilii,349500.20,685488,33
Pdu-Mir-242-4a_5p,UUGCGUAGGCGUUGUGCACAGA,uguguauuuugccuacgcaaauu,uugcguaggcguugugcacagauuugaucacagagguggucuguguauuuugccuacgcaaauu,scaffold_7:29836783..29836847:+,Bilateria,1,P. dumerilii,349516.20,685488,64
Pdu-Mir-252-P1_5p,CUAAGUACUAGCGCCGCAGGA,cugcuguccuagugcuuaaug,cuaaguacuagcgccgcaggaguuccuuuuuaagccuccugcuguccuagugcuuaaug,scaffold_5:66482390..66482449:-,Bilateria,1,Bilateria,247056.30,472107,12474
Pdu-Mir-252-P2_5p,CUAAGUAGUAGCGCCGCAGGUA,ccugcacccugcugcuuauca,cuaaguaguagcgccgcagguaguugucaacuauaccugcacccugcugcuuauca,scaffold_5:66483205..66483261:-,Bilateria,1,Bilateria,178217.80,348929,629
Pdu-Mir-278_3p,UCGGUGGGACUUUCGUUCGUUC,acgaaugaaauucucgacaggguc,acgaaugaaauucucgacagggucgauucacaagcgaucggugggacuuucguucguuc,scaffold_2:55309987..55310046:+,Bilateria,1,Bilateria,82864.10,200000,3846
Pdu-Mir-281_3p-5p,UGUCAUGGAGUUGCUCUCUUUA,aagggagcauucuuggacagu,aagggagcauucuuggacaguggucaaucaaaaacugucauggaguugcucucuuua,scaffold_22:3227625..3227682:-,Bilateria,1,Bilateria,12436.10,15048,9338
Pdu-Mir-29-P1_3p,UAGCACCAUUUGAAAUCAGUUU,gcuggguucuucuggugcugga,gcuggguucuucuggugcuggauaccauaacucuagcaccauuugaaaucaguuu,scaffold_11:27895590..27895645:-,Bilateria,1,P. dumerilii,135734.10,262415,3813
Pdu-Mir-29-P2_5p-3p,CUGGUCUCAAGUGGUGGAUAGA,uagcaccauuugaaaucagu,cuggucucaagugguggauagaggucugaaaacugucuagcaccauuugaaaucagu,scaffold_11:27907196..27907253:-,Bilateria,1,P. dumerilii,30727.10,52183,8079
Pdu-Mir-31_5p,AGGCAAGAUGUUGGCAUAGCUGA,agcucugucccauguugccacc,aggcaagauguuggcauagcugagucacguggcgcgucagcucugucccauguugccacc,scaffold_1:92405032..92405092:+,Bilateria,1,Bilateria,177030.40,342818,4411
Pdu-Mir-315_5p,UUUUGAUUGUUGCUCAGAAAGCC,cuaucggguaguaaucaaaaaa,uuuugauuguugcucagaaagccguugugacugacuggcuaucggguaguaaucaaaaaa,scaffold_11:16298118..16298178:+,Bilateria,1,Bilateria,1028403.10,1989302,27859
Pdu-Mir-33_3p,missing but found in previous prediction/genome assembly,,,,Bilateria,1,,,,
Pdu-Mir-34_5p,UGGCAGUGUGGUUAGCUGGUUGU,aaccacuaucugcccugucuua,uggcagugugguuagcugguuguguguccguagaaauguuacaaccacuaucugcccugucuua,scaffold_4:52046695..52046759:+,Bilateria,1,Bilateria,84068.40,161647,2859
Pdu-Mir-375_3p,UUUGUUCGUCCGGCUCGCGUUA,augugagcuauucguacagagc,augugagcuauucguacagagcuuauuucucuugcuuuguucguccggcucgcguua,scaffold_31:4109488..4109545:-,Bilateria,1,Bilateria,6646.60,12536,493
Pdu-Mir-7_5p,UGGAAGACUAGUGAUUUUGUUGUU,caaugaaacacuaucuuccaua,uggaagacuagugauuuuguuguuguucgcugaccuaacaaugaaacacuaucuuccaua,scaffold_1:24169743..24169803:-,Bilateria,1,Bilateria,292519.10,573435,321
Pdu-Mir-71_5p,UGAAAGACAUGGGUAGUGAGAUG,gcucgcuacccugucuuuccag,ugaaagacauggguagugagauggagagaaagaaacagcucgcuacccugucuuuccag,scaffold_3:67085297..67085356:+,Bilateria,1,Bilateria,632926.00,1148756,92692
Pdu-Mir-76_3p-5p,UUCGUUGUCGUCGAAACCUGCCU,acagguuucacgauuuucgaacau,acagguuucacgauuuucgaacauaagacaauuuuuauauguucguugucgucgaaaccugccu,scaffold_58:1786823..1786887:+,Bilateria,1,Bilateria,29959.10,33994,24759
Pdu-Mir-8_3p,UAAUACUGUCAGGUAAAGAUGUU,caucuuacugggcagcauuaga,caucuuacugggcagcauuagacuugguagccauacucuaauacugucagguaaagauguu,scaffold_13:14140837..14140898:-,Bilateria,1,Bilateria,977639.20,1756672,160898
Pdu-Mir-9_5p,UCUUUGGUUAUCUAGCUGUAUGA,auaaagcuagguuaccaaagcu,ucuuugguuaucuagcuguaugagugaagauauacuucauaaagcuagguuaccaaagcu,scaffold_1:38229931..38229991:+,Bilateria,1,Bilateria,79454.40,155086,752
Pdu-Mir-92-1_3p,AAUUGCACUUGUCCCGGCCUGC,agguugugacagcugcaauaugg,agguugugacagcugcaauauggucuuuacaauccaauugcacuugucccggccugc,scaffold_1:194081866..194081923:-,Bilateria,1,P. dumerilii,696608.70,1345752,20608
Pdu-Mir-92-2_3p,AAUUGCACUUGUCCCGGCCUGC,cuggugggacuuaugcaacuug,cuggugggacuuaugcaacuugauuuucaaccacaaauugcacuugucccggccugc,scaffold_1:194083611..194083668:-,Bilateria,1,P. dumerilii,889507.50,1729752,14971
Pdu-Mir-92-3_3p,AAUUGCACUUGUCCCGGCCUGC,gggucgugauuugugcacuuuug,gggucgugauuugugcacuuuuguugucacucagucaaauugcacuugucccggccugc,scaffold_1:194084057..194084116:-,Bilateria,1,P. dumerilii,884137.00,1724372,9816
Pdu-Mir-96-P1_5p,UUUGGCACCAGUGGAAUAGUCAC,gaaauuccauuggugacauaug,uuuggcaccaguggaauagucacuuguuuuaaaaugugaaauuccauuggugacauaug,scaffold_1:138807632..138807691:-,Bilateria,1,Bilateria,475670.50,932676,323
Pdu-Mir-96-P1bx_or_P1dx_5p,AUUUGGCACUAGUGGAAUGGUC,gaguuucauuaaugccaacacc,auuuggcacuaguggaauggucaucuguuauccgaugugaguuucauuaaugccaacacc,scaffold_39:3782468..3782528:-,Bilateria,1,P. dumerilii,52158.90,102221,86
Pdu-Mir-96-P1by_or_P1dy_5p,AUUUGGCACGAGUGGAAUAUUCG,guuauccaccugugccauauaa,auuuggcacgaguggaauauucguaucucucaccgguuauccaccugugccauauaa,scaffold_39:3780733..3780790:-,Bilateria,1,P. dumerilii,19652.10,38021,533
Pdu-Mir-96-P2_5p,CUUGGCACUGGUAGAAUUCACUGA,agggauucuagagugcucaaaa,cuuggcacugguagaauucacugaguguauuugaccaucagggauucuagagugcucaaaa,scaffold_11:45340966..45341027:-,Bilateria,1,Bilateria,675175.20,1312429,11891
Pdu-Mir-96-P3_5p,AAUGGCACUGGUAGAAUUCACGG,gugggucuucuggugccgugca,aauggcacugguagaauucacgguucuuuaagaauuccgugggucuucuggugccgugca,scaffold_7:11760213..11760273:-,Bilateria,1,Bilateria,5385979.00,10563572,792
Pdu-Bantam-1_3p,UGAGAUCAUGGUGAAAACUAAU,ugguuuucacaauggucuauaucaga,ugguuuucacaauggucuauaucagaguauauucaaaacccugagaucauggugaaaacuaau,scaffold_2:72666494..72666557:-,Protostomia,2,Protostomia,410363.70,788425,16479
Pdu-Bantam-2_3p,UGAGAUCAUUGUGAAAACUGAUU,cugguuuucacauuggucuucc,cugguuuucacauuggucuuccagagugaguuucucgucugagaucauugugaaaacugauu,scaffold_2:72665913..72665975:-,Protostomia,2,P. dumerilii,9627.70,18670,206
Pdu-Mir-1175_3p,UGAGAUUCAACUCCUCCAACUGC,aguggagagaguucuaucucauc,aguggagagaguucuaucucaucgucucaguucaaucuggugagauucaacuccuccaacugc,scaffold_1:113487497..113487560:+,Protostomia,2,Protostomia,29199.30,57062,202
Pdu-Mir-12_3p-5p,CGUGCCUUUUGUGAUUCUCUUG,ugaguauuacaucagguacuga,ugaguauuacaucagguacugaguguuuauaagacguccgugccuuuugugauucucuug,scaffold_7:46912750..46912810:-,Protostomia,2,Protostomia,5274.00,5383,4961
Pdu-Mir-1993_3p,UAUUAUGCUGUUAUUCACGAGA,ucgggaauaucaguguucuaugcc,ucgggaauaucaguguucuaugccguuuguugaagguauuaugcuguuauucacgaga,scaffold_1:57292928..57292986:-,Protostomia,2,Protostomia,51741.30,101114,367
Pdu-Mir-2-oA2_5p-3p,UGGCCAAGGGGGCUGUGAUGUG,uaucacagcccaugcuuuggucaaa,uggccaagggggcugugauguguugaaaugcgucauaucacagcccaugcuuuggucaaa,scaffold_3:66418561..66418621:+,Protostomia,2,P. dumerilii,3515.70,4954,1940
Pdu-Mir-2-oAa1_3p,UAUCACAGCGUGCUUUGAUGAGCU,cucgcgaagucgcugugccagg,cucgcgaagucgcugugccagguuuuaacgaguccuaucacagcgugcuuugaugagcu,scaffold_3:67088839..67088898:+,Protostomia,2,P. dumerilii,616036.00,1125239,83081
Pdu-Mir-2-oB2_3p,UAUCACAGCCCGCUUUGACAAGU,guguugaagugguugugaugug,guguugaagugguugugauguguuguacuaguguccauaucacagcccgcuuugacaagu,scaffold_3:66418750..66418810:+,Protostomia,2,P. dumerilii,386812.10,754747,3960
Pdu-Mir-2-oBb1_3p-5p,UAUCACAGCAGCGCUUUGAUGAGUC,ggcaucaaggguucugugaaaug,ggcaucaaggguucugugaaaugcugaauuguaccauaucacagcagcgcuuugaugaguc,scaffold_3:67088402..67088463:+,Protostomia,2,P. dumerilii,19864.90,24558,14398
Pdu-Mir-2-oC2_3p,UAUCACAGCCAAUUUGACAGCC,cuguuggauuuguugugacuaug,cuguuggauuuguugugacuauguauaaggcaucauaucacagccaauuugacagcc,scaffold_3:66419071..66419128:+,Protostomia,2,P. dumerilii,157276.00,285509,22973
Pdu-Mir-2-oCc-a1_3p,UAUCACAGCCAGCUUUGAUGAGC,cccaucuuaguggcuguggugug,cccaucuuaguggcuguggugugcauuuaugccgacauaucacagccagcuuugaugagc,scaffold_3:67088097..67088157:+,Protostomia,2,P. dumerilii,90677.60,168088,9764
Pdu-Mir-2-oD2_3p,UAUCACAGCCCGCUUUGGUCAUA,cggucaaaguggcugagauaug,cggucaaaguggcugagauauguuuuuguguucguaucacagcccgcuuuggucaua,scaffold_3:66419294..66419351:+,Protostomia,2,P. dumerilii,125137.20,236937,8507
Pdu-Mir-2-oDc-b1_3p,UAUCACAGCCAGCUUUGAUGAGC,ccaucuaaguggcugugaugug,ccaucuaaguggcugugaugugguguugcgaugcauaucacagccagcuuugaugagc,scaffold_3:67087900..67087958:+,Protostomia,2,P. dumerilii,86994.70,169091,1537
Pdu-Mir-2-oE2_3p,UAUCACAGCCAGAUUUGGUAUAUC,agccaaaucggcugugaaaug,agccaaaucggcugugaaauguuauaucaacugagucguaucacagccagauuugguauauc,scaffold_3:66419578..66419640:+,Protostomia,2,P. dumerilii,5.30,19921,314
Pdu-Mir-2-oEd1_3p,UAUCACAGCCAGCUUUGACGAGC,cgucacaguggcugugaagug,cgucacaguggcugugaagugguuagaugaacgcauaucacagccagcuuugacgagc,scaffold_3:67087490..67087548:+,Protostomia,2,P. dumerilii,202393.90,390305,6673
Pdu-Mir-2-oFe1_5p,UAUCACAGCCUUGCUUGGAUCAUA,cgguccaagugguugagauagc,cgguccaagugguugagauagcuguuuucucuaaacugggguaucacagccuugcuuggaucaua,scaffold_3:67087095..67087160:+,Protostomia,2,P. dumerilii,66951.70,120828,10431
Pdu-Mir-2-oGc-c1_3p,UAUCACAGCCAGCUUUGAUGAGC,caucaauccuggcauguuaua,caucaauccuggcauguuauaguauccacagucgagcuaucacagccagcuuugaugagc,scaffold_3:67086276..67086336:+,Protostomia,2,P. dumerilii,106830.00,206363,3081
Pdu-Mir-277_3p,UAAAUGCAUUAUCUGGUAUGUA,cauaucagaaaugcacuuugca,cauaucagaaaugcacuuugcauguuacuauaaaaguguaaaugcauuaucugguaugua,scaffold_4:52020820..52020880:+,Protostomia,2,Protostomia,33404.50,64878,636
Pdu-Mir-279-1a_3p,UGACUAGAUCCACACUCAUCC,augacuguaggucuaguccaug,augacuguaggucuaguccauguuuaaugucaugacuagauccacacucaucc,scaffold_9:2657710..2657763:-,Protostomia,2,P. dumerilii,7139840.00,10000000,40300
Pdu-Mir-279-1b_3p,UGACUAGAUCCACACUCAUCC,ggugagugggauuuuggucaug,ggugagugggauuuuggucauguuuuuuaauaucuucaugacuagauccacacucaucc,scaffold_1:184772430..184772489:-,Protostomia,2,P. dumerilii,7124963.10,13972313,2986
Pdu-Mir-279-2a_5p-3p,AUGACUGUAGGUCUAGUCCAUG,ugacuagauacacacucaucc,augacuguaggucuaguccauguuuaaugucaugacuagauacacacucaucc,scaffold_3:17716402..17716455:+,Protostomia,2,P. dumerilii,33404.10,40300,25220
Pdu-Mir-279-2b_5p,AUGACUGUAGGUCUAGUCCAUG,ugauuagucaaacacucauagc,augacuguaggucuaguccauguuuaauaucaugauuagucaaacacucauagc,scaffold_3:90160574..90160628:-,Protostomia,2,P. dumerilii,20558.90,40300,29
Pdu-Mir-317_3p,UGAACACAGCUGGUGGUAUCUCUUU,agaguacuccagcguggucgca,agaguacuccagcguggucgcauguuguuaaagugugaacacagcuggugguaucucuuu,scaffold_4:52017422..52017482:+,Protostomia,2,Protostomia,1971760.20,3808028,59486
Pdu-Mir-36_5p-3p,GGUGAGUGGAUACUCAGGUGGUG,ucaccggguauacauucauccg,ggugaguggauacucaggugguguuccaauugacgucaucaccggguauacauucauccg,scaffold_9:2652939..2652999:-,Protostomia,2,Protostomia,16456.00,20316,11961
Pdu-Mir-67_3p-5p,ACCUUAUUCAGUGGUGUUGUGGU,ucacaaccugcaugaaugaggua,accuuauucagugguguuguggugagguuaaaaagcaucacaaccugcaugaaugaggua,scaffold_2:34906472..34906532:+,Protostomia,2,Protostomia,7081.30,5601,8287
Pdu-Mir-750_3p,CCAGAUCUAACUCUUCCAGCUCA,cgcuggaagcuuaggucuccgca,cgcuggaagcuuaggucuccgcagugucauuccugccagaucuaacucuuccagcuca,scaffold_1:113485471..113485529:+,Protostomia,2,Protostomia,320940.00,629405,96
Pdu-Mir-87_3p,GUGAGCAAAGUUUCAGGUGUGU,cugccugaaauuuucgcucagaccu,cugccugaaauuuucgcucagaccuguaaucaaaaggugagcaaaguuucaggugugu,scaffold_1:126238902..126238960:+,Protostomia,2,Protostomia,121288.70,236771,1131
Mir-87-P1orP2,not Found,,,,Protostomia,2,,,,
Pdu-Mir-1986_5p-3p,CAAGGAUCCUGGGGAAGCCCCC,uggauuucccaugauccguaac,caaggauccuggggaagcccccuuccaucaaugguggauuucccaugauccguaac,scaffold_10:42047757..42047813:+,Lophotrochozoa,3,Lophotrochozoa,922.50,1409,400
Pdu-Mir-1989-1-a_5p,UCAGCUGUAAAGAUGCCUUCUU,ggagccauuuuaacugcugaca,ucagcuguaaagaugccuucuugaaauucauacaaggagccauuuuaacugcugaca,scaffold_10:38602058..38602115:-,Lophotrochozoa,3,P. dumerilii,183179.00,358361,930
Pdu-Mir-1989-2-a_5p,UCAGCUGUAAAGAUGCCUUCUU,ggagucauuuuaacugcugaca,ucagcuguaaagaugccuucuugaaauuuaaacaaggagucauuuuaacugcugaca,scaffold_10:38602337..38602394:-,Lophotrochozoa,3,P. dumerilii,183159.20,358361,893
Pdu-Mir-1989-3-a_5p,UCAGCUGUAAAGAUGCCUUCUU,gagacauuuuaacugcugacau,ucagcuguaaagaugccuucuugaaauuuacaaaaggagacauuuuaacugcugacau,scaffold_10:38602627..38602685:-,Lophotrochozoa,3,P. dumerilii,185008.50,358361,4521
Pdu-Mir-1989-4-b_5p,UCAGCUGUAACGAUGCCUUCUU,ggagucaucuuaacugcugaca,ucagcuguaacgaugccuucuugaaauuuaaacaaggagucaucuuaacugcugaca,scaffold_10:38602893..38602950:-,Lophotrochozoa,3,P. dumerilii,77880.10,152733,17
Pdu-Mir-1989-5-c_5p,UCAGCUGUCACGAUGCCUUCUU,gggggcauuuuaacugcugaca,ucagcugucacgaugccuucuugucauuuaccgaagggggcauuuuaacugcugaca,scaffold_10:38603309..38603366:-,Lophotrochozoa,3,P. dumerilii,75253.30,146955,645
Pdu-Mir-1989-6-d_5p,UCAGCUGUCGCGAUGCCUUCUU,gaagguguuaccacugcugaca,ucagcugucgcgaugccuucuuuucacaauuucuagcaagaagguguuaccacugcugaca,scaffold_10:38603735..38603796:-,Lophotrochozoa,3,P. dumerilii,239624.70,462761,7244
Pdu-Mir-1990-1orP1_3p_+_,UGGGACUAUGUCAACUUACAAC,uggaaguuaacguagucccggg,uggaaguuaacguagucccggguguguuuauucccugggacuaugucaacuuacaac,scaffold_10:42046321..42046378:-,Lophotrochozoa,3,P. dumerilii,311736.80,586149,25308
Pdu-Mir-1990-1orP1_5p-3p_-_,UGUAAGUUGACAUAGUCCCAGG,cgggacuacguuaacuuccagc,uguaaguugacauagucccagggaauaaacacacccgggacuacguuaacuuccagc,scaffold_10:42046323..42046380:+,Lophotrochozoa,3,P. dumerilii,482472.40,668328,278012
Pdu-Mir-1990-2orP2_5p,UGUAAGUUAACGUAGUCCAAGGUU,uugagauuacgauaacuuuccau,uguaaguuaacguaguccaagguuuaugaaaggcaaacuugagauuacgauaacuuuccau,scaffold_18:7382654..7382715:+,Lophotrochozoa,3,P. dumerilii,281184.60,536754,14770
Pdu-Mir-1992-v1_5p-3p,CAUUAGUGGAUAACGGCUGGUA,ucagcaguuguaccacugaugug,cauuaguggauaacggcugguaguaacauuacgucugccuaucagcaguuguaccacugaugug,scaffold_12:23661448..23661512:-,Lophotrochozoa,3,P. dumerilii,5945.70,7275,4370
Pdu-Mir-1992-v2_3p,CAUUAGUGGAUAACGGCUGGUA,cucagcacuaauccaucugug,cucagcacuaauccaucugugcgucuuccugacucuggcacuggcagcacauuaguggauaacggcuggua,scaffold_12:23661490..23661561:-,Lophotrochozoa,3,P. dumerilii,0.50,7275,0
Pdu-Mir-1994_3p,missing but found in previous prediction/genome assembly,,,,Lophotrochozoa,3,,,,
Pdu-Mir-1987_3p-5p,ACUGCCAGAUGUCAUGUUGUGCA,cauaacuggcaccugggcauguug,cauaacuggcaccugggcauguugcucuucacucaacugccagaugucauguugugca,scaffold_1:66332418..66332476:-,Annelida,4,Annelida,12082.00,11105,12594
Pdu-Mir-1995_5p-3p,GUACAUCUCACAUUGUGACCAU,ggucucugugugaaaugucgau,guacaucucacauugugaccaugugacuuaacaauggucucugugugaaaugucgau,scaffold_5:31347920..31347977:-,Annelida,4,Annelida,3843.50,4695,2837
Pdu-Mir-1996-1,CUCAAGUGAGGUCAGUGCUACU,gggcacugcccucaacugaagc,cucaagugaggucagugcuacuguucuugaaccaggggcacugcccucaacugaagc,scaffold_1:189982417..189982474:-,Annelida,4,P. dumerilii,187236.10,367161,86
Pdu-Mir-1996-2,AUCAAGUGAGGUCAGAUCUUGG,agggucauggucucaauugaccc,aucaagugaggucagaucuugggugacauggggcgccagggucauggucucaauugaccc,scaffold_1:189983200..189983260:-,Annelida,4,P. dumerilii,41591.80,81564,8
Pdu-Mir-1997_3p,UCUGCAGGUUCACAUCAGCCCCA,gggcgauggguucucgcagggu,gggcgauggguucucgcagggugagauaaaacuauucugcagguucacaucagcccca,scaffold_4:4379290..4379348:+,Annelida,4,Annelida,206632.40,400125,5167
Pdu-Mir-1998_3p,UUGAACGCAGAGAUGUACAUCA,auguauaucccuacguccacacu,auguauaucccuacguccacacuucccucuccaguugaacgcagagauguacauca,scaffold_2:43820342..43820398:+,Annelida,4,Annelida,198594.10,381448,8087
Pdu-Mir-2000_5p,UGACUAAAAGUAUUGAAGGCUU,gucuucacuacuuuuaguuugg,ugacuaaaaguauugaaggcuuuaagucaaaucucuguuaaagucuucacuacuuuuaguuugg,scaffold_2:43826989..43827053:+,Annelida,4,Annelida,163326.70,318281,417
Pdu-Mir-2685_3p,UAACUCAGUCAGAUCACAGUC,cagugguauggcucgaguugua,cagugguauggcucgaguuguagagacguaacauauaacucagucagaucacaguc,scaffold_30:5202777..5202833:+,Annelida,4,Annelida,41062.60,78776,1758
Pdu-Mir-2689_3p,UAUCCUGGCCUGCAAGUGCACA,ugcauucgcaugucuggaugca,ugcauucgcaugucuggaugcaauuacauuugcauuuguauccuggccugcaagugcaca,scaffold_49:2560194..2560254:-,Annelida,4,Annelida,4656.00,9117,7
Pdu-Mir-2691-1_3p,AUUUGCAAUGUAUCACUGCCCG,ggcgaugucacauugcagucg,ggcgaugucacauugcagucguguguguuuaaaaucgauuugcaauguaucacugcccg,scaffold_12:16062900..16062959:+,Annelida,4,P. dumerilii,5.00,866,0
Pdu-Mir-2691-2_3p,AUUUGCAAUGAAUCACUGCCCA,gguggcgauucuuugcagucg,gguggcgauucuuugcagucguguaaaauggaagacgauuugcaaugaaucacugccca,scaffold_12:26857282..26857341:+,Annelida,4,P. dumerilii,5.00,1594,0
Pdu-Mir-2691-3_3p,AUUUUGCAUCGUAUCACUGCCGG,gguagcgauucccugacaaaaucu,gguagcgauucccugacaaaaucuucauauaguuagauuuugcaucguaucacugccgg,scaffold_27:5652967..5653026:-,Annelida,4,P. dumerilii,3962.80,7537,236
Pdu-Mir-2691-4_3p,GUUUUGCAUGGUAUCACUGCUC,guagugauacuuugcacaaaucg,guagugauacuuugcacaaaucguaaagaaacaucgguuuugcaugguaucacugcuc,scaffold_44:156337..156395:+,Annelida,4,P. dumerilii,1295.70,2479,61
Pdu-Mir-2691-5_3p,GACGGUGAAACUUGUGCAAAACC,uuuugcaaaguaucacagcuua,gacggugaaacuugugcaaaaccuuacauccaguugguuuugcaaaguaucacagcuua,scaffold_4:75689505..75689564:-,Annelida,4,P. dumerilii,1358.20,2440,223
Pdu-Mir-2692_3p,CCAGUCAAUGUUGACACCACCGCU,ggugaugucccauugacuuuggug,ggugaugucccauugacuuuggugggauuuuguaaaacaccagucaauguugacaccaccgcu,scaffold_10:42044737..42044800:+,Annelida,4,Annelida,2598.00,5057,30
Pdu-Mir-2705-1_3p,UCUGCAAGGUAAGUGCUGUCU,gcggugcuuaccuuugcagcug,gcggugcuuaccuuugcagcugaugauuugccaucugcaagguaagugcugucu,scaffold_1:66337315..66337369:-,Annelida,4,P. dumerilii,267679.90,524958,76
Pdu-Mir-2705-2_3p,UCUGCAACGUAAGUGCUGUCA,acagcgcuaugccuuuauugcaacc,ucugcaacguaagugcugucauggaaacagcgcuaugccuuuauugcaacc,scaffold_6:5069891..5069942:+,Annelida,4,P. dumerilii,0.50,281,0
Pdu-Mir-2707_3p-5p,AAUACUUAUUUUGCUUCUGACAGA,ugucaagcagauuaaguauugu,ugucaagcagauuaaguauuguugguaauggaauaaauacuuauuuugcuucugacaga,scaffold_26:3813112..3813171:+,Annelida,4,P. dumerilii,86535.60,75065,94668
,,,,,,,,,,
56(or 60) out of 61 conserved families,,,,,,,,,,
71(or 76) out of 78 conserved miRNAs,,,,,,,,,,