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Commit dab4afab authored by cyril.cros's avatar cyril.cros
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test this now

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1 merge request!1Check docker
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This commit is part of merge request !1. Comments created here will be created in the context of that merge request.
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.gitlab-ci.yml
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......@@ -52,6 +52,7 @@ kustomize_build_apply:
- envsubst < deployment/jbrowse2-dep.tmpl > deployment/jbrowse2-dep.yaml
- kubectl apply -k deployment
- kubectl -n $NS wait --for=condition=available --timeout=60s deploy/jbrowse2
- kubectl -n $NS rollout status deployment/jbrowse2
dependencies:
- cluster_access_test
......
image/jbrowse_script.sh
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......@@ -3,5 +3,5 @@
jbrowse create annelids
cd annelids
jbrowse add-assembly https://s3.embl.de/annelids/pdumv021/pdumv021_genome.fa.gz --name pdumv021
jbrowse add-track https://s3.embl.de/annelids/pdumv021/pdumv021.sorted.gff.gz -d "Kevin pdumv021 GTF file" -n "Genes models" --category "Annotations"
jbrowse add-track https://s3.embl.de/annelids/pdumv021/pdumv021.gff.gz -d "Kevin pdumv021 GTF file" -n "Genes models" --category "Annotations"
jbrowse add-track https://s3.embl.de/annelids/pdumv021/transdecoder.gff.gz -d "Kevin runs transdecoder" -n "Transdecoder results" --category "Annotations"
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