... | ... | @@ -86,7 +86,7 @@ FCS Runner generates following files |
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* `ID_baseFileName.xml`: File contains position and type of FCS points with respect to image.
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* `ID_baseFileName.txt`: Plain txt file containing part of the information in `ID_baseFileName.xml`
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The ID is an increasing number (0001, 0002,...)
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The ID is an increasing number (0001, 0002,...), the `baseFileName` is set in the
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### Image file
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As default FCSRunner saves image in *czi* format (`ID_baseFileName.czi|lsm`). The metadata of the image contains the stage and focus position. To get the XYZ coordinates in ZEN load the image and click reuse and then the position checkbox.
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