Update README.md

README.md

 # Protein bioinformatics for beginners
 
-## Schedule
-
-7 - 9 November, ATC Computer lab
+## Dates: 8 - 9 November
+## Time: TBA
+## Venue: ATC Computer lab, EMBL Heidelberg
+## Trainers: Toby Gibson, Marc Gouw, Manjeet Kumar, Benjamin Lang, Malvika Sharan
 
 ## Program
 
 **Part-1 Protein databases and sequence analysis**
 
 1. Protein databases: Malvika
-    - NCBI (very quick overview)
+    - NCBI (quick overview)
     - UniProt
         - Swissprot
         - Cross-refrences and link-outs
@@ -20,46 +21,53 @@
         - BLASTp, BLASTn, PSI-BLAST, 
     - HHPred
     - HMMER
-3. Multiple sequence alignments: Manjeet
-    - UniProt aligner
+3. Multiple sequence alignments: Ben
+    - Muscle, Clustal omega, etc.
     - EMBOSS dot-plot
-    - Muscle, Clustal omega
 4. Other resources: Toby & Malvika
     - Human portein atlas
     - Antibodypedia
     - EMBOSS toolkits
-        - Pepinfo
-		- Sixpack
-		- dotmatcher: http://emboss.bioinformatics.nl/cgi-bin/emboss/dotmatcher
-    - Prediction of transmembrane helices in proteins: (This is a bit misplaced)
-	    TMHMM (http://www.cbs.dtu.dk/services/TMHMM/)
+    - Pepinfo
+    - Sixpack
+    - dotmatcher
 
 **Part-2 Protein structure analysis**
 
 * Toby's keynote: * Secondary vs tertiary structure vs protein complexes (Theory)
 
-1. Structure database: Toby
-    - PDB (http://www.rcsb.org/pdb/home/home.do)
-2. Structure visualization: Toby
-    - Motif visualization:
-        - Jalview, MEME, Weblogo, Chimera (https://screenshots.debian.net/package/chimera2)
-3. Structure prediction: ???
-    - jpred (http://www.compbio.dundee.ac.uk/jpred/)
-    - Jalview linked tool Janet (?)
-    - PSIpred (?)
-    - Tertiary structure prediction
-    - I-TASSER
-4. Domain databases: Ben
-    - InterPro, 
+1. Protein Structures: Toby
+    - Structure dtabase: PDB
+    - Structure visualization
+        - Chimera V2
+    - Motif visualization
+        - Jalview
+        - MEME
+        - Weblogo
+2. Structure prediction: Malvika
+    - jpred
+    - Jalview linked tool Janet
+    - PSIpred
+    - Tertiary structure prediction: Phyre2, I-TASSER
+3. Domain databases: Manjeet
+    - InterPro & InterProScan
     - Pfam
     - SCOP 
-    - SMART?
-    - SUPERFAMILY?
+    - SMART, SUPERFAMILY
+4. Prediction of transmembrane helices in proteins: Manjeet
+    - TMHMM
 5. Intrinsically disordered region : Marc
-    - ELM ( http://elm.eu.org)
-    - IUPRED (http://iupred.enzim.hu)
-    - DISPROT?
+    - ELM
+    - IUPRED
+    - DISPROT
 6. Protein-protein interaction: Malvika
-    - STRING (http://string-db.org)
-    - BioGrid?
-    - MINT?
+    - STRING
+    - BioGrid
+    - MINT
+
+### References:
+    - http://www.sciencedirect.com/science/book/9788131222973
+    - http://molbiol-tools.ca/Protein_Chemistry.htm
+    - http://www.ebi.ac.uk/Tools/pfa/
+
+### Piratenpad link: https://piratenpad.de/p/gibson_workshops
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